PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892407.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 309aa    MW: 34936.2 Da    PI: 5.9657
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix667.9e-2129118286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt+qe+ +Li+a++e++ +l+rg+lk  +Weev+  +           +++++qC++k+e+l++ry+++k+++ +  s++ss+++yfd ++
  XP_015892407.1  29 WTHQETVHLIQAYQEKWYSLKRGQLKSSQWEEVAVTVaarcgyDYSEPSKTAIQCRHKMEKLRQRYRAEKKQRLGL-SGASSSWQYFDLMD 118
                     ***********************************9986656555556899*******************999976.89999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2028120No hitNo description
PROSITE profilePS500906.2142891IPR017877Myb-like domain
SMARTSM005952.5E-836125IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MATPPPSASA SPSPPAANVT AKKPQPLPWT HQETVHLIQA YQEKWYSLKR GQLKSSQWEE  60
VAVTVAARCG YDYSEPSKTA IQCRHKMEKL RQRYRAEKKQ RLGLSGASSS WQYFDLMDSL  120
ERGPLPISAR PMVAVPCSHV EAQEDEDDDE DEEDDVENHS NKSRSINYIL RRPAVVNRFA  180
GEPKLSREGG GGGGGGNDGN WGFSGSLREP VAKKRKESVD EDYEEVEVEG QRGRELVLKL  240
AGEIRGFADR FIGMENMKME ILKETERCRM EMETKRMDMI LQSQHKIVDS IAKAFESSNH  300
QFNMAQQEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206215LREPVAKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892407.10.0trihelix transcription factor ASIL1
TrEMBLA0A2P5CIE11e-113A0A2P5CIE1_TREOI; Myb-like domain containing protein
STRINGXP_008382615.12e-97(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.17e-48Trihelix family protein