PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015892159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26700.1 Da PI: 10.3516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.1e-11 | 111 | 152 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ XP_015892159.1 111 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 152 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-5 | 110 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-4 | 110 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-7 | 111 | 155 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-6 | 113 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVSLRRRKLL GLCSGRSSFL DPLPRFSSNG IAPANSQYTR PVSVHPMPSD DADHLELKMS 60 AKVGPGSSNV SGSSFSSISK DQHNQPVAGP PIKRRKRHRR KHFQNQEPCL MRGVYFKNMK 120 WQAAIKVDKK QIHLGTVGSQ EEAAHLYDRA AFMCGREPNF ELSEEEKQEL RKFKWEEFLA 180 MTRHAITNKK HRRRLGAESQ KRSEPSRLQN GDWEGKNEVN DLSASEDMEP DTSAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015892159.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892159.1 | 1e-176 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | A0A2P5AHQ2 | 1e-117 | A0A2P5AHQ2_PARAD; AP2/ERF transcription factor | ||||
STRING | EOX93857 | 1e-114 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-48 | ERF family protein |