PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015891673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 166aa MW: 18786.6 Da PI: 8.4859 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 64.4 | 2.3e-20 | 56 | 164 | 265 | 374 |
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 sa+fd+le+ + +e+e r+ +E + l++ i+++va+eg+er+ r+ ++e Wr+ + + + + +ls+ a+ q +l+ ++++ + +ve + ++l XP_015891673.1 56 SAFFDCLENCV-KEEECRKAIEGV-LAEGIRDIVAKEGSERITRNVKMEVWRAFFARYKMVETKLSDAAMYQTSLVAKQFGcGSACNVERNGKCL 148 79******997.788999999998.9*******************************************************9999********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 + gWk+ p+ s+S+W+ XP_015891673.1 149 IAGWKGTPINSLSVWK 164 ***************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 7.8E-18 | 56 | 164 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MFARRIEHPL CKLSGLAQGY GDKDHVNFHE VSSPSSSKLP HTEKLPPYTT WIFLDSAFFD 60 CLENCVKEEE CRKAIEGVLA EGIRDIVAKE GSERITRNVK MEVWRAFFAR YKMVETKLSD 120 AAMYQTSLVA KQFGCGSACN VERNGKCLIA GWKGTPINSL SVWKFR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015891673.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024933634.1 | 1e-73 | DELLA protein RGL1-like | ||||
TrEMBL | A0A0R0KPV6 | 1e-45 | A0A0R0KPV6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A151SJZ9 | 1e-45 | A0A151SJZ9_CAJCA; DELLA protein RGL1 | ||||
TrEMBL | A0A314ZYE6 | 3e-45 | A0A314ZYE6_PRUYE; DELLA protein RGL1-like | ||||
TrEMBL | A0A445LI55 | 2e-45 | A0A445LI55_GLYSO; DELLA protein RGL2 | ||||
STRING | XP_008235214.1 | 8e-47 | (Prunus mume) | ||||
STRING | XP_008369109.1 | 9e-48 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-12 | RGA-like 2 |