PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891672.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 566aa MW: 64209.1 Da PI: 6.8371

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	142.6	4.1e-44	233	471	1	241
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.sv.selykalppsetsekn..sseelaalklfsevsPil 91 l +lLl++Ae v ++++ a++lL r + ++s++++p+qR++++f+eAL++ + r ++ ++ + ++ ++ e+ s+++ ++k +++ P++ XP_015891672.1 233 LAHLLLAAAEKVGHQQFVSASRLLLRREWISSSRANPVQRVVFCFAEALREMIEReTGrGKINERMENKNMGESPrrLSTSIPFVK-CYQAIPFP 326 579**************************************************3221234444433333322232344444433.67889* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 ++ ++ q+Ile ve+++r+H iD++i G+QW ++aLa+R e l+iT+vg + ++++eetg+rL ++Ae+l++pf+f+++++++ XP_015891672.1 327 QVLTFAGIQTILENVESQTRIHFIDLEIRSGVQWTIVMEALAARVECrIECLKITAVGY---TGTKKIEETGKRLVSVAESLNLPFSFKAVYVSN 418 ******************************************9651569****...6899************************* PP GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 ++d++ e ++++ +E+l++ ++l+l ++ +++ +le+ +++++ s+ P ++v+ XP_015891672.1 419 MDDIKEELFEIEDdDESLIIYSSLALRTMISRPRCLEN----LMRAITSVYPSMMVC 471 *******999************99999999....***********98 PP
2	GRAS	48.9	1.1e-15	474	564	284	374
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E + l++ i+++va+eg+er+ r+ ++e Wr+ + + + + +ls+ a+ q +l+ ++++ + +ve + ++l+ gWk+ p+ s+S+W+ XP_015891672.1 474 AIEGV-LAEGIRDIVAKEGSERITRNVKMEVWRAFFARYKMVETKLSDAAMYQTSLVAKQFGcGSACNVERNGKCLIAGWKGTPINSLSVWK 564 45555.999***************************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.427	207	566	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-41	233	471	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-13	474	564	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MDNGNLFSFT PFDFNGFPGE YGPPEHYEEE EPAVLKGKQG LCPAGVQDFQ NVNHLPLKFS 60 FYQQVNNNTK NFEDDQHQEQ QQQHQESKSD YMVFDDFDTL GPAAKPVSRQ ESSSHQLIVC 120 SGPNRSSSTG TDIAESITQM QIPSLSSMGL LSDYGNFGFK KLKGDQRLSN VSMSRSYMSR 180 KKSSTEEIMR VAGARYIQFF NRYYYDDYHN MPMHPFGYAL SGLSGEETRD VELAHLLLAA 240 AEKVGHQQFV SASRLLLRRE WISSSRANPV QRVVFCFAEA LREMIERETG RGKINERMEN 300 KNMGESPRRL STSIPFVKCY QAIPFPQVLT FAGIQTILEN VESQTRIHFI DLEIRSGVQW 360 TIVMEALAAR VECRIECLKI TAVGYTGTKK IEETGKRLVS VAESLNLPFS FKAVYVSNMD 420 DIKEELFEIE DDDESLIIYS SLALRTMISR PRCLENLMRA ITSVYPSMMV CRKAIEGVLA 480 EGIRDIVAKE GSERITRNVK MEVWRAFFAR YKMVETKLSD AAMYQTSLVA KQFGCGSACN 540 VERNGKCLIA GWKGTPINSL SVWKFR

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MDNGNLFSFT PFDFNGFPGE YGPPEHYEEE EPAVLKGKQG LCPAGVQDFQ NVNHLPLKFS  60
FYQQVNNNTK NFEDDQHQEQ QQQHQESKSD YMVFDDFDTL GPAAKPVSRQ ESSSHQLIVC  120
SGPNRSSSTG TDIAESITQM QIPSLSSMGL LSDYGNFGFK KLKGDQRLSN VSMSRSYMSR  180
KKSSTEEIMR VAGARYIQFF NRYYYDDYHN MPMHPFGYAL SGLSGEETRD VELAHLLLAA  240
AEKVGHQQFV SASRLLLRRE WISSSRANPV QRVVFCFAEA LREMIERETG RGKINERMEN  300
KNMGESPRRL STSIPFVKCY QAIPFPQVLT FAGIQTILEN VESQTRIHFI DLEIRSGVQW  360
TIVMEALAAR VECRIECLKI TAVGYTGTKK IEETGKRLVS VAESLNLPFS FKAVYVSNMD  420
DIKEELFEIE DDDESLIIYS SLALRTMISR PRCLENLMRA ITSVYPSMMV CRKAIEGVLA  480
EGIRDIVAKE GSERITRNVK MEVWRAFFAR YKMVETKLSD AAMYQTSLVA KQFGCGSACN  540
VERNGKCLIA GWKGTPINSL SVWKFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891672.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024933634.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A314ZYE6	1e-175	A0A314ZYE6_PRUYE; DELLA protein RGL1-like
STRING	XP_009346627.1	1e-174	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-30	RGA-like 1