PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015891165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GATA | ||||||||
Protein Properties | Length: 205aa MW: 23588.8 Da PI: 8.6311 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 4.9e-19 | 140 | 174 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C++ kTp+WR gp g+k+LCnaCG++y++ +l XP_015891165.1 140 CSHCQAEKTPQWRAGPMGPKSLCNACGVRYKSGRL 174 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.6E-15 | 134 | 184 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.61E-13 | 137 | 196 | No hit | No description |
PROSITE profile | PS50114 | 10.989 | 138 | 170 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.2E-14 | 138 | 172 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 6.8E-17 | 140 | 174 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 140 | 165 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.08E-13 | 140 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAVEDKYNVN KNYNHEDHLD LEQYFNLFDP LFKEIDFSTD KVFDDLPISL ADEPIISWNN 60 IDLEVPQKEH ESCFSSSADY GDQLSMINSP KGHEKVKPPK DVDQNNICSF AIKKKRSKTG 120 SKKRTSCFAL KNDCMKRRCC SHCQAEKTPQ WRAGPMGPKS LCNACGVRYK SGRLVPEYRP 180 AASPSFDSFK HSNFHKRILK RKMDT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 202 | KRILKRKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015891165.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891165.1 | 1e-153 | GATA transcription factor 4-like | ||||
TrEMBL | A0A1R3GGP9 | 8e-35 | A0A1R3GGP9_COCAP; Zinc finger, GATA-type | ||||
STRING | POPTR_0005s06720.1 | 2e-34 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16347 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 5e-31 | GATA transcription factor 9 |