PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015891109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 23484.8 Da PI: 5.5846 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92 | 1e-28 | 10 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevls 94 lppGf+F Ptd+elv ++L +k+ +++ +i+e++++ ++Pw+++ ++ + ++y+F+++ k +nr+tk+gyWk++ + ++ + XP_015891109.1 10 LPPGFQFCPTDQELVLHFLYRKALLLPCHP--TIPELNLHLHDPWEFNGRALL-SGNIYYFISKVK-------ENRTTKNGYWKESDVdEVPIQA 94 79***********************99776..7**************954333.357899988765.......6899*******87762568888 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ge vg+kk Lvf g p+g+kt+Wvm+ey++ XP_015891109.1 95 SHGERVGVKKFLVFCLGVPPTGNKTSWVMEEYKI 128 8*******************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-36 | 6 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.206 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-20 | 11 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGDGNMMISL PPGFQFCPTD QELVLHFLYR KALLLPCHPT IPELNLHLHD PWEFNGRALL 60 SGNIYYFISK VKENRTTKNG YWKESDVDEV PIQASHGERV GVKKFLVFCL GVPPTGNKTS 120 WVMEEYKICN TSGFSAAIYK KRGKQKLNCN KWVLCRVHER KGILSEQHTL CYGDYDDDNG 180 TELSCLDEMF LSLDDDLEEI SLQTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-30 | 8 | 161 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-30 | 8 | 161 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-30 | 8 | 161 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-30 | 8 | 161 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 8 | 161 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-30 | 8 | 161 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-30 | 8 | 161 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015891109.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891109.1 | 1e-154 | NAC domain-containing protein 104-like | ||||
TrEMBL | V4SCU4 | 2e-72 | V4SCU4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006432173.1 | 3e-73 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-48 | xylem NAC domain 1 |