PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890997.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 378aa    MW: 41783.7 Da    PI: 6.295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19153202255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd +     + +r++lg+f tae+Aa+a+++a+++++g
  XP_015890997.1 153 KYRGVRQRP-WGKFAAEIRDpF-----KaARVWLGTFETAEDAARAYDEAALRFRG 202
                     8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-32152211IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-22153211IPR016177DNA-binding domain
CDDcd000183.05E-33153212No hitNo description
PROSITE profilePS5103224.487153210IPR001471AP2/ERF domain
PfamPF008476.9E-13153202IPR001471AP2/ERF domain
SMARTSM003809.7E-36153216IPR001471AP2/ERF domain
PRINTSPR003673.8E-11154165IPR001471AP2/ERF domain
PRINTSPR003673.8E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MQKVANSREK GREGWSFEPP LVFSTLDRER EMSTMVSALK HVVCGGDLVV DDHLSSDISG  60
SVSSDNNTKA SWQSSGSKRD REEEEEEQGE ERGALQVSES VSGLRTPFQD FPNQESSHAS  120
AAMEWSSNRT TIPTTQYEYS REIQREVLEP RRKYRGVRQR PWGKFAAEIR DPFKAARVWL  180
GTFETAEDAA RAYDEAALRF RGNKAKLNFP ENVTLRSPIS GSPATNLTIS DSTNTLLSIP  240
TSTDPIVHSQ AIHHSHSQQR IESNPLLSYS TYQMVDFQRQ QQPINLFDQM VISSSSSSPP  300
SSMADLMASS HNFSSPSTSS PSFASSSVSS SSSPPPASLY TFHGAQPSFR FMAGDTASAD  360
FQTKQQHSSS GHYSNSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-25152213163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890997.10.0ethylene-responsive transcription factor ABR1 isoform X2
TrEMBLA0A2P5BG715e-73A0A2P5BG71_PARAD; AP2/ERF transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-26related to AP2 6