PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890996.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 381aa    MW: 42041 Da    PI: 6.295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19156205255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd +     + +r++lg+f tae+Aa+a+++a+++++g
  XP_015890996.1 156 KYRGVRQRP-WGKFAAEIRDpF-----KaARVWLGTFETAEDAARAYDEAALRFRG 205
                     8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-32155214IPR001471AP2/ERF domain
SMARTSM003809.7E-36156219IPR001471AP2/ERF domain
PfamPF008477.0E-13156205IPR001471AP2/ERF domain
PROSITE profilePS5103224.487156213IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22156214IPR016177DNA-binding domain
CDDcd000183.11E-33156215No hitNo description
PRINTSPR003673.8E-11157168IPR001471AP2/ERF domain
PRINTSPR003673.8E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MQKVANSREK GREGWSFEPP LVFSTLDRER EMSTMVSALK HVVCGGDLVV DDHLSSDISG  60
SVSSDNNTKA SWQSSGSKRD REEEEEEQGE ERGALQVSES VSGLRTPFQD FPNQESSHAS  120
AVGTAMEWSS NRTTIPTTQY EYSREIQREV LEPRRKYRGV RQRPWGKFAA EIRDPFKAAR  180
VWLGTFETAE DAARAYDEAA LRFRGNKAKL NFPENVTLRS PISGSPATNL TISDSTNTLL  240
SIPTSTDPIV HSQAIHHSHS QQRIESNPLL SYSTYQMVDF QRQQQPINLF DQMVISSSSS  300
SPPSSMADLM ASSHNFSSPS TSSPSFASSS VSSSSSPPPA SLYTFHGAQP SFRFMAGDTA  360
SADFQTKQQH SSSGHYSNSS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25155216163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890996.10.0ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A2P5BG712e-74A0A2P5BG71_PARAD; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-26related to AP2 6