PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890380.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 194aa MW: 21739.4 Da PI: 8.4503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.4e-05	165	191	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h ++Er+RR+++ ++f L +lP + XP_015890380.1 165 DHVIAERKRREKLTQRFIALSAILPGL 191 5999*********************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.6E-5	160	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.547	161	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-5	165	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.75E-4	166	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MHALMEAPST KWSSELEMEE MNCLDYYCLD DELSFESLYT ESYLSHPNSN PKSSQCFTTY 60 TPMQSPHGPQ TVIERPAKQL KITLDSSSSS HIISFQSSNV STVKPKKSVG YNSNGNGNID 120 FPSLISHQDS YKQMQNLSTN YGQGVKTPVN DSAIRLSRTP SLAKDHVIAE RKRREKLTQR 180 FIALSAILPG LKKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	ERKRRE
2	170	175	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890380.1	1e-144	transcription factor NAI1-like
STRING	cassava4.1_010938m	1e-30	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	6e-14	bHLH family protein