PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890103.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 262aa    MW: 30184.4 Da    PI: 9.5243
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-161761697
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    +++p  f+++   k   + + +l+d sgrsW v l  +   ++  +t+GW++F++++ L+ gDf++Fk+dg+s f  +vk+f
  XP_015890103.1  1 MSIPPAFVNKL--KAGLPGKAILKDFSGRSWHVGL--EIIERHLHFTSGWEKFASDHFLEHGDFLIFKYDGNSLF--NVKIF 76
                    789*****666..4557778***************..99999999**************************9999..88887 PP
2B338.52.1e-121742571599
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                      l +p +f++eh +k     +l+l + ++ +W vk+ + +++gr+ +t+GW +Fv+ n+++++D +vF   l  + ++++++v+v+r+
  XP_015890103.1 174 FLHVPGSFLNEHRIK--LMHDLILHH-QNDKWPVKV-VIRNDGRHAITTGWIDFVRKNEIEAKDKCVFDavLGTSnTCEQMHVQVIRA 257
                     478999***999766..444677655.8899*****.577778999***********************6633334999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-21181IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-17176No hitNo description
PfamPF023623.8E-14176IPR003340B3 DNA binding domain
PROSITE profilePS5086315.397179IPR003340B3 DNA binding domain
SMARTSM010196.4E-6179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-20181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-16157257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-18157257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.828160258IPR003340B3 DNA binding domain
CDDcd100172.12E-10161256No hitNo description
SMARTSM010192.3E-5163258IPR003340B3 DNA binding domain
PfamPF023621.4E-10175257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSIPPAFVNK LKAGLPGKAI LKDFSGRSWH VGLEIIERHL HFTSGWEKFA SDHFLEHGDF  60
LIFKYDGNSL FNVKIFGLNG CKKEVVNNEG IKRGQVKDKE EEEQKKKEDN KDAQTDNSLA  120
EKEKSGPSDE HNGSKKRKRA ATKLEENEIQ DTAECVQPKN PRFVVNITKY YRYFLHVPGS  180
FLNEHRIKLM HDLILHHQND KWPVKVVIRN DGRHAITTGW IDFVRKNEIE AKDKCVFDAV  240
LGTSNTCEQM HVQVIRAKPR VK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890103.20.0putative B3 domain-containing protein At5g66980 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-32B3 family protein