PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 611aa MW: 67427.1 Da PI: 4.9012 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355 | 1.1e-108 | 244 | 611 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++Ll+cA+ +++++ +a + L rl+e +s++gdp++R++++fteAL +r++ + k++++ et+ s+e + +k++++++P+ kf+hl XP_015889931.1 244 LKALLDCAR-LADSEPDRAVKSLIRLKESVSEQGDPTERVTFHFTEALYKRVSM---QAEKSMSMYETT---SEEFTIPYKALNDACPYSKFAHL 331 689******.566688999999*******************************9...777777888887...8999999**************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 taNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g + +l +tg+rL++fA+ l+++fef++ v +++ XP_015889931.1 332 TANQAILEATERASKIHILDFGIVQGIQWAALLQALATRSTGKPiRIRISGIPAPALGksPAASLFATGNRLREFAKLLDLNFEFEP-VLIPIDE 425 ****************************************88887*********9999889999***********************.6889*** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ ++++v+p+E+laVn++lql++llde+ + + L+l ksl+Pk+v++ e ea++n+ F++rf +al+yy+a+f+sle l+r+s er XP_015889931.1 426 LNQSSFKVDPDEVLAVNFMLQLYNLLDETPIAVQ---TALRLAKSLNPKIVTLGEYEASLNRVGFMTRFKNALRYYTAVFESLEPYLSRDSPERL 517 **************************88877777...9********************************************************* PP GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 vEr llgr+i +v e+ +rer+e +e+W++ +e++ F+pvpls++a++qa+ ll +++ s y++ e+ ++ l W++ pL++vS+Wr XP_015889931.1 518 EVERLLLGRRIAGLVGPEEPGsKRERTEDKEQWKSLMESSDFEPVPLSHYAVSQARILLWNYNySPLYSLIESPPGFLsLAWNEVPLLTVSSWR 611 ****************99886699***************************************9999**9888766666**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.539 | 217 | 589 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-106 | 244 | 611 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QHHQQQQLTG LTPFSMSPWT TTHHGMSHTP 60 NMPYGLPPSG FPDPFQVPGG SDSGEPGFQF PHLEHQSTGF RFSDFGAGPG GEFDSDEWMD 120 SLMGGGDSTD SSNLPSGCDA WQSNADFGLY GADPFAACPS RLSVPCSSPS DLNRVLFTES 180 QKSPNPLQPQ VPAWTPPAPP TSPPVVVNDT KSINPPPKSV QKNDVVTGGV STSSPEIESA 240 PPLLKALLDC ARLADSEPDR AVKSLIRLKE SVSEQGDPTE RVTFHFTEAL YKRVSMQAEK 300 SMSMYETTSE EFTIPYKALN DACPYSKFAH LTANQAILEA TERASKIHIL DFGIVQGIQW 360 AALLQALATR STGKPIRIRI SGIPAPALGK SPAASLFATG NRLREFAKLL DLNFEFEPVL 420 IPIDELNQSS FKVDPDEVLA VNFMLQLYNL LDETPIAVQT ALRLAKSLNP KIVTLGEYEA 480 SLNRVGFMTR FKNALRYYTA VFESLEPYLS RDSPERLEVE RLLLGRRIAG LVGPEEPGSK 540 RERTEDKEQW KSLMESSDFE PVPLSHYAVS QARILLWNYN YSPLYSLIES PPGFLSLAWN 600 EVPLLTVSSW R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-151 | 242 | 611 | 3 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889931.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889931.1 | 0.0 | SCARECROW-LIKE protein 7 isoform X2 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A2P5D312 | 0.0 | A0A2P5D312_PARAD; GRAS transcription factor | ||||
STRING | XP_010113493.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6280 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |