PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889667.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WOX
Protein Properties Length: 285aa    MW: 31618.5 Da    PI: 6.955
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-202990257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  XP_015889667.1 29 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 90
                    58*****************8678*************************************97 PP
2Wus_type_Homeobox113.98e-372892265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_015889667.1 28 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 92
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-7690IPR009057Homeodomain-like
SuperFamilySSF466891.67E-112495IPR009057Homeodomain-like
PROSITE profilePS5007110.5112591IPR001356Homeobox domain
SMARTSM003891.1E-52795IPR001356Homeobox domain
CDDcd000863.37E-73092No hitNo description
PfamPF000462.1E-173090IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEPQNQQQQQ NEDGGGSGKG NGFLCRQSST RWTPTTDQIR ILKDLYYNNG VRSPSAEQIQ  60
RISARLRQYG KIEGKNVFYW FQNHKARERQ KKRFTSDSSP AVSMQRGGGV AVSNVWKPDH  120
EAFHNKFPNI SHGVCSASPS SASTLTVGQN MGNYGYGSVT MEKNFRDCSI SAGGSSTGVG  180
GGSLSHNFGW VGVEPYSSTY SFIDKRKVLL DEYDDEEEED EASPEIETLP LFPMHGEDIN  240
GIKHNSHGYY SGWYRPSEDG GNRGGSRTSL ELSLNSYSRR SPDSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889667.10.0protein WUSCHEL
SwissprotQ8LL119e-86WUS_PETHY; Protein WUSCHEL
TrEMBLM5VSN51e-112M5VSN5_PRUPE; Uncharacterized protein
STRINGEMJ043771e-112(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-48WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]