PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 26416.6 Da PI: 4.7235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 152 | 173 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C++ F ++ L H+r+H XP_015889546.1 152 VCSVCKRDFGSWKALSGHMRSH 173 7********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.016 | 151 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-6 | 153 | 175 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MTNPKDSSEK SPAEKETQPQ QSQGGEEETA GAGGSSSSPP KEKGETAKSV AEVGGGSSSV 60 VPPRPTQTGA GRGGAPTRLQ PRAAASASRA VGSGGVGGTG GAGGEQGGGG GGGAGGGPTA 120 VATAARAPPS GSGGRAKRKA SEIIGPVGVE MVCSVCKRDF GSWKALSGHM RSHPERQWRG 180 IFPPPVEPRF AAAQGQQSNP PDQPQPPTGQ GVPEERVALD VDLNQPHQGE EEEGGEEASP 240 PPPEPEKDAG GGAFDLNMPP ASGDGDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889546.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889546.1 | 0.0 | homeobox protein Hox-D11 | ||||
TrEMBL | W9SMQ7 | 8e-25 | W9SMQ7_9ROSA; Uncharacterized protein | ||||
STRING | XP_010113245.1 | 1e-25 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 8e-12 | C2H2-like zinc finger protein |