PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889433.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 267aa    MW: 29866.9 Da    PI: 6.9479
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.3e-18169203135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_015889433.1 169 CSHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 203
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.6E-842257IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.09E-14163225No hitNo description
SMARTSM004017.4E-16163213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358167199IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.2E-14167201IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.09E-14168215No hitNo description
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003204.4E-16169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDVYGLSATD CFRIDDLLDF SNDDIFSSST TTTSSSTDSE TNHYHHHPPQ PQDPSILINN  60
TAHLSSTDFT NDLCVPGDDV AELEWLSQFV DDSFSDFPMT GLAGAPNYMN EASFSGRARS  120
KRSRAPTTSW ASTPVEPESL IGTTTGKPKS KRDSSPSKAA SETGRLRRCS HCASEKTPQW  180
RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRKKEEMRQQ  240
HQQRRQGEAE EQEPFYAHPQ HHGFQVY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889433.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889433.10.0GATA transcription factor 4
SwissprotO497418e-81GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A067K9622e-95A0A067K962_JATCU; GATA transcription factor
STRINGXP_010089251.12e-92(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-65GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]