PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889150.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 333aa    MW: 37095.8 Da    PI: 8.6496
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19184217134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_015889150.1 184 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 217
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-13177218No hitNo description
SMARTSM004016.0E-19178229IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374182214IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15182217IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.21E-12183215No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003205.4E-17184217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAPTYHNLPP SPLHEDDHHH HHLFHLQLAQ SSSCNLSLSS PFFTNPRPHH QPEFCYTESQ  60
PFQLHDQLEA DKTFPCAGGS CDQYPEAESQ ESHKNIWKNN DDIANENESE MNSNSAKWMP  120
SEMRMIRKTM NNNPNHASTD SPLDITLKVN DDDHKKHPLS PIGTESSCNI YSSNNYNGNT  180
IRVCADCNTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM AAAAAAANGT VVSVEKAACM  240
KSISKRSGQN KVKADKKSRN MGCAPPQFKK RCKQILSNCP VPNNKLGRNK KKLCFEDLAI  300
SISQNSAFQR VFPQDEKEAA ILLMALSYGL VHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368562e-35BT136856.1 Lotus japonicus clone JCVI-FLLj-6D5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889150.10.0GATA transcription factor 21
TrEMBLW9QJX12e-83W9QJX1_9ROSA; Putative GATA transcription factor 22
STRINGXP_010090039.13e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-33cytokinin-responsive gata factor 1