PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888874.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 621aa MW: 69081.1 Da PI: 8.0062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00094	3	24	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+ F + n++rHir+H XP_015888874.1 3 KCDKCSLEFCSAINYRRHIRVH 24 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	2	29	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	4	25	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MQKCDKCSLE FCSAINYRRH IRVHHRLKKL DKDSAKNRDI LGAFWDKLSL EDAKEVVSFK 60 NVTLEEVPGS TLIKALTTLI RKPGFSSLPH VYLKAGSALL DIVQARPSRF PISSKELFSI 120 LDDASERTFL SGPAVLMQRY VFDGEAGKIA LETKNLVACI SFLVEQKLVK AWLADKDAEA 180 LMFQKLLVEE EEAAQKRQAE LLERKRQKKL RQKEQKTKEQ RRGEKADDKE SIDEVPEAMP 240 LAETSNPSMA CDFRTPIPDM LHHVALSNVE SLNTDENVDP ESQPGFGCGQ SDSSTGPNGG 300 RRIVQGSSRR HPVSRWQALP KSQRRVLNSI HAGETFHAPK LGAIQNRGTH RDLRTARVWS 360 RKPKPEYDGE NLKARVEKEV LNEPDQIKNH EVLIGSISVT LGNCSEEGNI PSGACDDCMI 420 EHQIPKSNVQ DKPQRPNSAQ SGMSSSKVKL WRQVSRPGNK GPIPVHNDSR ESECDATAEK 480 GHSETLSSES CERLSAMDAY NGSIANGFMC PDETGNSAFS VQEAKAFLAE RWKEAIAADH 540 VRLVLGSDLE PSDCLEIQTD SEEAVSQSSK IHKRSIAGNE ENRLLKVETI ESPIPGPAKA 600 RFRTKPEKGV KIYIPKQKTN G

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MQKCDKCSLE FCSAINYRRH IRVHHRLKKL DKDSAKNRDI LGAFWDKLSL EDAKEVVSFK  60
NVTLEEVPGS TLIKALTTLI RKPGFSSLPH VYLKAGSALL DIVQARPSRF PISSKELFSI  120
LDDASERTFL SGPAVLMQRY VFDGEAGKIA LETKNLVACI SFLVEQKLVK AWLADKDAEA  180
LMFQKLLVEE EEAAQKRQAE LLERKRQKKL RQKEQKTKEQ RRGEKADDKE SIDEVPEAMP  240
LAETSNPSMA CDFRTPIPDM LHHVALSNVE SLNTDENVDP ESQPGFGCGQ SDSSTGPNGG  300
RRIVQGSSRR HPVSRWQALP KSQRRVLNSI HAGETFHAPK LGAIQNRGTH RDLRTARVWS  360
RKPKPEYDGE NLKARVEKEV LNEPDQIKNH EVLIGSISVT LGNCSEEGNI PSGACDDCMI  420
EHQIPKSNVQ DKPQRPNSAQ SGMSSSKVKL WRQVSRPGNK GPIPVHNDSR ESECDATAEK  480
GHSETLSSES CERLSAMDAY NGSIANGFMC PDETGNSAFS VQEAKAFLAE RWKEAIAADH  540
VRLVLGSDLE PSDCLEIQTD SEEAVSQSSK IHKRSIAGNE ENRLLKVETI ESPIPGPAKA  600
RFRTKPEKGV KIYIPKQKTN G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	209	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888874.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888874.1	0.0	uncharacterized protein LOC107423753 isoform X3
TrEMBL	A0A314UHP5	0.0	A0A314UHP5_PRUYE; Uncharacterized protein
STRING	EMJ20142	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-110	C2H2-like zinc finger protein