PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888868.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 681aa MW: 75778.8 Da PI: 7.5465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+ F + n++rHir+H XP_015888868.1 63 KCDKCSLEFCSAINYRRHIRVH 84 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	62	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MKSEDGNDSL DTIIRQAIGK EPFLSFSRAG DSPVQWIQLL HALDQQELPG WPLLSPLKVQ 60 MQKCDKCSLE FCSAINYRRH IRVHHRLKKL DKDSAKNRDI LGAFWDKLSL EDAKEVVSFK 120 NVTLEEVPGS TLIKALTTLI RKPGFSSLPH VYLKAGSALL DIVQARPSRF PISSKELFSI 180 LDDASERTFL SGPAVLMQRY VFDGEAGKIA LETKNLVACI SFLVEQKLVK AWLADKDAEA 240 LMFQKLLVEE EEAAQKRQAE LLERKRQKKL RQKEQKTKEQ RRGEKADDKE SIDEVPEAMP 300 LAETSNPSMA CDFRTPIPDM LHHVALSNVE SLNTDENVDP ESQPGFGCGQ SDSSTGPNGG 360 RRIVQGSSRR HPVSRWQALP KSQRRVLNSI HAGETFHAPK LGAIQNRGTH RDLRTARVWS 420 RKPKPEYDGE NLKARVEKEV LNEPDQIKNH EVLIGSISVT LGNCSEEGNI PSGACDDCMI 480 EHQIPKSNVQ DKPQRPNSAQ SGMSSSKVKL WRQVSRPGNK GPIPVHNDSR ESECDATAEK 540 GHSETLSSES CERLSAMDAY NGSIANGFMC PDETGNSAFS VQEAKAFLAE RWKEAIAADH 600 VRLVLGSDLE PSDCLEIQTD SEEAVSQSSK IHKRSIAGNE ENRLLKVETI ESPIPGPAKA 660 RFRTKPEKGV KIYIPKQKTN G

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MKSEDGNDSL DTIIRQAIGK EPFLSFSRAG DSPVQWIQLL HALDQQELPG WPLLSPLKVQ  60
MQKCDKCSLE FCSAINYRRH IRVHHRLKKL DKDSAKNRDI LGAFWDKLSL EDAKEVVSFK  120
NVTLEEVPGS TLIKALTTLI RKPGFSSLPH VYLKAGSALL DIVQARPSRF PISSKELFSI  180
LDDASERTFL SGPAVLMQRY VFDGEAGKIA LETKNLVACI SFLVEQKLVK AWLADKDAEA  240
LMFQKLLVEE EEAAQKRQAE LLERKRQKKL RQKEQKTKEQ RRGEKADDKE SIDEVPEAMP  300
LAETSNPSMA CDFRTPIPDM LHHVALSNVE SLNTDENVDP ESQPGFGCGQ SDSSTGPNGG  360
RRIVQGSSRR HPVSRWQALP KSQRRVLNSI HAGETFHAPK LGAIQNRGTH RDLRTARVWS  420
RKPKPEYDGE NLKARVEKEV LNEPDQIKNH EVLIGSISVT LGNCSEEGNI PSGACDDCMI  480
EHQIPKSNVQ DKPQRPNSAQ SGMSSSKVKL WRQVSRPGNK GPIPVHNDSR ESECDATAEK  540
GHSETLSSES CERLSAMDAY NGSIANGFMC PDETGNSAFS VQEAKAFLAE RWKEAIAADH  600
VRLVLGSDLE PSDCLEIQTD SEEAVSQSSK IHKRSIAGNE ENRLLKVETI ESPIPGPAKA  660
RFRTKPEKGV KIYIPKQKTN G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	269	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888868.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888857.1	0.0	uncharacterized protein LOC107423753 isoform X1
Refseq	XP_015888864.1	0.0	uncharacterized protein LOC107423753 isoform X1
Refseq	XP_015888867.1	0.0	uncharacterized protein LOC107423753 isoform X1
TrEMBL	A0A314UHP5	0.0	A0A314UHP5_PRUYE; Uncharacterized protein
STRING	EMJ20142	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-140	C2H2-like zinc finger protein