PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888867.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 695aa MW: 77217.5 Da PI: 7.7114

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+ F + n++rHir+H XP_015888867.1 77 KCDKCSLEFCSAINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MPIAKLKASN TPDAMKSEDG NDSLDTIIRQ AIGKEPFLSF SRAGDSPVQW IQLLHALDQQ 60 ELPGWPLLSP LKVQMQKCDK CSLEFCSAIN YRRHIRVHHR LKKLDKDSAK NRDILGAFWD 120 KLSLEDAKEV VSFKNVTLEE VPGSTLIKAL TTLIRKPGFS SLPHVYLKAG SALLDIVQAR 180 PSRFPISSKE LFSILDDASE RTFLSGPAVL MQRYVFDGEA GKIALETKNL VACISFLVEQ 240 KLVKAWLADK DAEALMFQKL LVEEEEAAQK RQAELLERKR QKKLRQKEQK TKEQRRGEKA 300 DDKESIDEVP EAMPLAETSN PSMACDFRTP IPDMLHHVAL SNVESLNTDE NVDPESQPGF 360 GCGQSDSSTG PNGGRRIVQG SSRRHPVSRW QALPKSQRRV LNSIHAGETF HAPKLGAIQN 420 RGTHRDLRTA RVWSRKPKPE YDGENLKARV EKEVLNEPDQ IKNHEVLIGS ISVTLGNCSE 480 EGNIPSGACD DCMIEHQIPK SNVQDKPQRP NSAQSGMSSS KVKLWRQVSR PGNKGPIPVH 540 NDSRESECDA TAEKGHSETL SSESCERLSA MDAYNGSIAN GFMCPDETGN SAFSVQEAKA 600 FLAERWKEAI AADHVRLVLG SDLEPSDCLE IQTDSEEAVS QSSKIHKRSI AGNEENRLLK 660 VETIESPIPG PAKARFRTKP EKGVKIYIPK QKTNG

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MPIAKLKASN TPDAMKSEDG NDSLDTIIRQ AIGKEPFLSF SRAGDSPVQW IQLLHALDQQ  60
ELPGWPLLSP LKVQMQKCDK CSLEFCSAIN YRRHIRVHHR LKKLDKDSAK NRDILGAFWD  120
KLSLEDAKEV VSFKNVTLEE VPGSTLIKAL TTLIRKPGFS SLPHVYLKAG SALLDIVQAR  180
PSRFPISSKE LFSILDDASE RTFLSGPAVL MQRYVFDGEA GKIALETKNL VACISFLVEQ  240
KLVKAWLADK DAEALMFQKL LVEEEEAAQK RQAELLERKR QKKLRQKEQK TKEQRRGEKA  300
DDKESIDEVP EAMPLAETSN PSMACDFRTP IPDMLHHVAL SNVESLNTDE NVDPESQPGF  360
GCGQSDSSTG PNGGRRIVQG SSRRHPVSRW QALPKSQRRV LNSIHAGETF HAPKLGAIQN  420
RGTHRDLRTA RVWSRKPKPE YDGENLKARV EKEVLNEPDQ IKNHEVLIGS ISVTLGNCSE  480
EGNIPSGACD DCMIEHQIPK SNVQDKPQRP NSAQSGMSSS KVKLWRQVSR PGNKGPIPVH  540
NDSRESECDA TAEKGHSETL SSESCERLSA MDAYNGSIAN GFMCPDETGN SAFSVQEAKA  600
FLAERWKEAI AADHVRLVLG SDLEPSDCLE IQTDSEEAVS QSSKIHKRSI AGNEENRLLK  660
VETIESPIPG PAKARFRTKP EKGVKIYIPK QKTNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888867.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888857.1	0.0	uncharacterized protein LOC107423753 isoform X1
Refseq	XP_015888864.1	0.0	uncharacterized protein LOC107423753 isoform X1
Refseq	XP_015888867.1	0.0	uncharacterized protein LOC107423753 isoform X1
TrEMBL	A0A314UHP5	0.0	A0A314UHP5_PRUYE; Uncharacterized protein
STRING	XP_008234210.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-140	C2H2-like zinc finger protein