PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888826.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 329aa    MW: 37724 Da    PI: 4.6741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18124173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     r +r++lg++ taeeAa  +++a+ +++g
  XP_015888826.1 124 RYRGVRQRP-WGKWAAEIRDPL----RrARIWLGTYETAEEAALVYDRAAISIKG 173
                     8********.**********73....45**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-32123180No hitNo description
PROSITE profilePS5103223.248124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29124180IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-21124180IPR016177DNA-binding domain
PfamPF008471.5E-12124173IPR001471AP2/ERF domain
SMARTSM003809.1E-35124187IPR001471AP2/ERF domain
PRINTSPR003677.7E-11125136IPR001471AP2/ERF domain
PRINTSPR003677.7E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLEMKSVRYI RYTEHRTVTN KLVKSHSLVK RQEPRIVRIS VMDEDATDSS SGEDEDLQGG  60
RGGVLNSVCR VKKLVNEVRI EEYGGVECRN SRNNNNNKTK QVVASSKSKP PQPASEQYFP  120
NGKRYRGVRQ RPWGKWAAEI RDPLRRARIW LGTYETAEEA ALVYDRAAIS IKGPDALTNF  180
LKPPGKDREG KKIENEDSDQ ECQIRLSSPT SVLRFQPVEF ESNNNNNNNN IKKVKEEEAE  240
QSDEWRPLPL QLESDDDGFV LLDSNFLEDC LESETPPPPI FLDEMSLVPE TTMVWKEEGF  300
GDMSVDLDED FGSCKWDVDN YFQDHLVMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-23122180362ATERF1
3gcc_A7e-23122180362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888826.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A2I4F8972e-78A0A2I4F897_JUGRE; ethylene-responsive transcription factor CRF5-like
STRINGXP_010109447.12e-78(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-52cytokinin response factor 4