PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888717.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 202aa    MW: 22154.6 Da    PI: 7.5029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-184393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  XP_015888717.1 43 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 93
                    68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-124393IPR001471AP2/ERF domain
SMARTSM003801.3E-3544107IPR001471AP2/ERF domain
PROSITE profilePS5103223.57844101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3144102IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2144103IPR016177DNA-binding domain
CDDcd000186.78E-3045102No hitNo description
PRINTSPR003671.2E-124556IPR001471AP2/ERF domain
PRINTSPR003671.2E-1283103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEHIPYTEDD LTITTPTTST SPHSSGETHR KSNPQGGGGT RHPVYRGVRK RRWGKWVSEI  60
REPRKKSRIW LGSFPVPEMA AKAYDVAAYC LKGRKAQLNF PDELEHLPRP SSCTARDIQA  120
AAAKAAHMKR SVSSKKNDAL EDSGGDGDDF WGEIELPELM NNGCYWNSCG WTTTSSSSSF  180
SGGGDASSWP DGDATQPFMA CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1837104775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888717.11e-150ethylene-responsive transcription factor ERF023
SwissprotQ1ECI22e-63ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2P5VV616e-83A0A2P5VV61_GOSBA; Uncharacterized protein
STRINGPOPTR_0014s09540.11e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]