PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | Dof | ||||||||
Protein Properties | Length: 327aa MW: 34924.2 Da PI: 8.7505 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.2 | 2.1e-39 | 24 | 82 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk XP_015888703.1 24 PEEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKK 82 6899*****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-26 | 19 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEEINHGSNA CTNKPAVLEK RARPEEQLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR 60 YWTEGGTLRN VPVGGGSRKN KKPITPFSSS SSSSSSAAAA SSKSIPDLNP LSLSRQQFPC 120 LNPRPPPPHY QGQDLNLSFH KYYGGAASAN QYMEVQKSEN DTTTTSSSND NNNNNNLQSN 180 TAASASVPFS SSCSSIELVR SSSGIGSRAG GLNSFIQTTP MMMLDSNAMY PSGFYLQEVK 240 PTTTTTPFGF CVDGLGLGSR YGGVQENNSN NNGGGGSGSG SGSGRILFPF ADFKQVSTNA 300 ASDVDHQNKG QGNSSGYWNG LLGGGSW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888702.1 | 0.0 | dof zinc finger protein DOF2.5 | ||||
Refseq | XP_015888703.1 | 0.0 | dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A2P6SIQ8 | 3e-79 | A0A2P6SIQ8_ROSCH; Putative transcription factor C2C2-Dof family | ||||
STRING | XP_004306645.1 | 8e-82 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.1 | 2e-39 | Dof family protein |