PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 354aa MW: 40462.3 Da PI: 4.9211 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.5 | 1.2e-27 | 120 | 180 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ gC ++k v+r +ed +++e+tY+g+H+++ XP_015888694.1 120 DDGYCWRKYGQKDILGANYPRSYYRCTHRyvqGCLATKLVQRLNEDASILEVTYRGRHTCR 180 8***************************9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.8E-27 | 111 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-24 | 118 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-38 | 119 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.241 | 120 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-25 | 120 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEKTMDLEQK NLISELIQGK ELAKQLKRQI ELCSSQETRD LLAAQIVLSY EKAISLLNQS 60 AFHGETKPTI ESPSPFGSPR SEICDQDSDQ KDIFKKRKTM PRWTEKVKVC SESGLDGPTD 120 DGYCWRKYGQ KDILGANYPR SYYRCTHRYV QGCLATKLVQ RLNEDASILE VTYRGRHTCR 180 QSSHLATASA TLNKQEFKQK ENEITFRQHE KEKPKQPQKM LSDNVAGLKV KTEDLDTRED 240 DIFPLFSFPS TSTECEYVEN QIFSESMMEN NFMGSFSPPF ISPATSESNY LSVSPFRLIN 300 FGLRDNVQIS ESELTEILSA PTSVANSPIG DLDFQLNEDD FQLNFSFDNH ELFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-17 | 120 | 180 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 97 | QKDIFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888694.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888693.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Refseq | XP_015888694.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Refseq | XP_015889378.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Refseq | XP_015889379.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A2N9J396 | 1e-138 | A0A2N9J396_FAGSY; Uncharacterized protein | ||||
STRING | EOX95753 | 1e-134 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-49 | WRKY family protein |