PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888571.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 271aa MW: 29555 Da PI: 8.7628

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_015888571.1 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.243	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-26	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-24	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MYHAKKISTA SLVPHKAQSA EQIANAGVLT GSPVKNSTPP GGSGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KFLPESPADG KGSKDEKKGS 120 GDSLSGSDSS TGVQINEALK MQMEVQKRLH EQLEVQRQLQ MRIEAQGKYL QKIIEEQQKL 180 GGVIKASESI PSAEDNKQEP SESETPADTS AGPSFPGKRQ RTDDGLPDES TSSPVQPKAD 240 QENSLVDQWN QDLYENDALF GSNSEGVKRK R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888571.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888571.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_015888572.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	6e-76	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M5VRH6	1e-140	M5VRH6_PRUPE; Uncharacterized protein
STRING	EMJ03601	1e-140	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-67	G2-like family protein