PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 450aa MW: 49868.9 Da PI: 7.3135 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.2e-17 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_015888058.1 55 RERWTEEEHKKFIEALKMYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 99 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.21E-17 | 49 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.922 | 50 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-10 | 51 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-16 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.4E-14 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 55 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.36E-11 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MLLMDQSEGI SSHIALPSGD GISLALASVQ PKDQFSCGNE YPPKVRKQYT ITKQRERWTE 60 EEHKKFIEAL KMYGRAWRKI EEHVGTKTAV QIRSHAQKFF SKVSRDQDAN NMCSVEPIEI 120 PPPRPKRKPV HPYPRKLVHP LSKEISMAEY STKSSSPNLS NLEMENQSPN LSNLELEYQS 180 PKSVLSAMGS DTLGSSNSNT PNGSLSPVSS GAGNLLSSKE IRTSFASPTV VLEETGSTQE 240 TSAKEASTTT TTQSLKLFGR TVLVTDSQRP SSPIVETCKS QPSNVHEEQH VKELPSSNIA 300 VLESLAGNLQ YTWSQFPQHS HMALYLMHCQ NESSNLFIST AATPPPWWSS YGDLSLGKGV 360 QKEGSWTGSN NGSENDDKCS DVDNAKEEKE LDLGFQLKSS LKSTFPGLRK SFDKCKKGFV 420 PYKRCIAEED TKSSTIHGEE REEKRTCLCL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888058.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880125.1 | 0.0 | protein REVEILLE 1-like | ||||
TrEMBL | A0A2N9GSA3 | 1e-139 | A0A2N9GSA3_FAGSY; Uncharacterized protein | ||||
STRING | EMJ16503 | 1e-133 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-58 | MYB_related family protein |