PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887958.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 200aa    MW: 22020.8 Da    PI: 6.1535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_015887958.1 34 YECTFCKRGFTNAQALGGHMNIH 56
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-43260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-63261No hitNo description
PROSITE profilePS5015711.4683461IPR007087Zinc finger, C2H2
SMARTSM003550.00973456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDSGKQQQGS SDSTSSEENE YRSEKQVKDL KRCYECTFCK RGFTNAQALG GHMNIHRKDR  60
AAANKAKHQT GSSTSSHGQI NSEDQSLSMA APRYYPAMES ANRNSYYPHM YFESSGSAGA  120
SNFPYNNSYY SIDDGGHSFI GSSRSSSSQT AAAAALTMNE ELMGANLSLR IDSAIWEDNE  180
VRRGVRNGDE VDLELRLGHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887958.11e-148transcriptional regulator SUPERMAN-like
TrEMBLA0A061ENL39e-46A0A061ENL3_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY059622e-46(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-16C2H2 family protein