PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887671.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 348aa MW: 39084 Da PI: 6.5196

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.4	1.1e-11	61	101	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k++rr+++NReAAr+sR+RKka++++Le+ +L + XP_015887671.1 61 SSDKAQRRLAQNREAARKSRLRKKAYVQQLETSRLKLAQLE 101 589****************************8544443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-8	57	109	No hit	No description
SMART	SM00338	7.4E-7	60	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-8	62	102	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	62	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.38E-7	64	104	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.4E-30	152	224	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGIYEPFRQV SMWKDTFGGD NLSYTGASTI GEVDAKLENK FELVSHESVQ PSGNDEEGNK 60 SSDKAQRRLA QNREAARKSR LRKKAYVQQL ETSRLKLAQL EQELERSRKQ GLYVGSPLGT 120 SHVGFSGTVN SGIMAFEMEY GHWVEEQHKQ NCELRNALQA HAADIQLRML VESALNHYYS 180 LFRMKADAAK ADVFYLVSGI WRTSAERFFL WIGGFRPSEL LTVLLPQIEP LTDQQVLDVG 240 NLQHSSQQAE DALSQGIDKL QQSLAHTMAA DPMSGDTYGS QMAAAVEKLD ELESFVSQAD 300 HLREQTLRRM SSILTTHQAA RGLLALGEYF RRLRALSSLW AARPCEPV

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGIYEPFRQV SMWKDTFGGD NLSYTGASTI GEVDAKLENK FELVSHESVQ PSGNDEEGNK  60
SSDKAQRRLA QNREAARKSR LRKKAYVQQL ETSRLKLAQL EQELERSRKQ GLYVGSPLGT  120
SHVGFSGTVN SGIMAFEMEY GHWVEEQHKQ NCELRNALQA HAADIQLRML VESALNHYYS  180
LFRMKADAAK ADVFYLVSGI WRTSAERFFL WIGGFRPSEL LTVLLPQIEP LTDQQVLDVG  240
NLQHSSQQAE DALSQGIDKL QQSLAHTMAA DPMSGDTYGS QMAAAVEKLD ELESFVSQAD  300
HLREQTLRRM SSILTTHQAA RGLLALGEYF RRLRALSSLW AARPCEPV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887671.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887672.1	0.0	transcription factor TGA3 isoform X4
Swissprot	Q93ZE2	1e-152	TGA7_ARATH; Transcription factor TGA7
TrEMBL	F6H0P0	0.0	F6H0P0_VITVI; Uncharacterized protein
STRING	VIT_18s0001g04470.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-155	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]