PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887664.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 403aa MW: 45388.6 Da PI: 7.9499

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	116	156	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k++rr+++NReAAr+sR+RKka++++Le+ +L + XP_015887664.1 116 SSDKAQRRLAQNREAARKSRLRKKAYVQQLETSRLKLAQLE 156 589****************************8544443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-8	112	164	No hit	No description
SMART	SM00338	7.4E-7	115	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	117	161	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	117	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.67E-7	119	159	No hit	No description
PROSITE pattern	PS00036	0	122	137	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.2E-30	207	279	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MIVKLAILLA VSSGNRSTKA CCERVVHFLA SLCFWILKIF NFEKNKKMEF ATSRQMGIYE 60 PFRQVSMWKD TFGGDNLSYT GASTIGEVDA KLENKFELVS HESVQPSGND EEGNKSSDKA 120 QRRLAQNREA ARKSRLRKKA YVQQLETSRL KLAQLEQELE RSRKQGLYVG SPLGTSHVGF 180 SGTVNSGIMA FEMEYGHWVE EQHKQNCELR NALQAHAADI QLRMLVESAL NHYYSLFRMK 240 ADAAKADVFY LVSGIWRTSA ERFFLWIGGF RPSELLTVLL PQIEPLTDQQ VLDVGNLQHS 300 SQQAEDALSQ GIDKLQQSLA HTMAADPMSG DTYGSQMAAA VEKLDELESF VSQADHLREQ 360 TLRRMSSILT THQAARGLLA LGEYFRRLRA LSSLWAARPC EPV

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MIVKLAILLA VSSGNRSTKA CCERVVHFLA SLCFWILKIF NFEKNKKMEF ATSRQMGIYE  60
PFRQVSMWKD TFGGDNLSYT GASTIGEVDA KLENKFELVS HESVQPSGND EEGNKSSDKA  120
QRRLAQNREA ARKSRLRKKA YVQQLETSRL KLAQLEQELE RSRKQGLYVG SPLGTSHVGF  180
SGTVNSGIMA FEMEYGHWVE EQHKQNCELR NALQAHAADI QLRMLVESAL NHYYSLFRMK  240
ADAAKADVFY LVSGIWRTSA ERFFLWIGGF RPSELLTVLL PQIEPLTDQQ VLDVGNLQHS  300
SQQAEDALSQ GIDKLQQSLA HTMAADPMSG DTYGSQMAAA VEKLDELESF VSQADHLREQ  360
TLRRMSSILT THQAARGLLA LGEYFRRLRA LSSLWAARPC EPV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887664.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887664.1	0.0	transcription factor TGA7 isoform X2
Swissprot	Q93ZE2	1e-153	TGA7_ARATH; Transcription factor TGA7
TrEMBL	F6H0P0	0.0	F6H0P0_VITVI; Uncharacterized protein
STRING	VIT_18s0001g04470.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-155	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]