PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887663.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 411aa MW: 46211.5 Da PI: 7.9499

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	124	164	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k++rr+++NReAAr+sR+RKka++++Le+ +L + XP_015887663.1 124 SSDKAQRRLAQNREAARKSRLRKKAYVQQLETSRLKLAQLE 164 589****************************8544443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	120	172	No hit	No description
SMART	SM00338	7.4E-7	123	183	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	125	169	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	125	165	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.83E-7	127	167	No hit	No description
PROSITE pattern	PS00036	0	130	145	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-30	215	287	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MIVKLAILLA VSSGNRSTKA CCERVVHFLA SLCFWILKIF NFEKNKKMEN MSSSSTQFAT 60 SRQMGIYEPF RQVSMWKDTF GGDNLSYTGA STIGEVDAKL ENKFELVSHE SVQPSGNDEE 120 GNKSSDKAQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL AQLEQELERS RKQGLYVGSP 180 LGTSHVGFSG TVNSGIMAFE MEYGHWVEEQ HKQNCELRNA LQAHAADIQL RMLVESALNH 240 YYSLFRMKAD AAKADVFYLV SGIWRTSAER FFLWIGGFRP SELLTVLLPQ IEPLTDQQVL 300 DVGNLQHSSQ QAEDALSQGI DKLQQSLAHT MAADPMSGDT YGSQMAAAVE KLDELESFVS 360 QADHLREQTL RRMSSILTTH QAARGLLALG EYFRRLRALS SLWAARPCEP V

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MIVKLAILLA VSSGNRSTKA CCERVVHFLA SLCFWILKIF NFEKNKKMEN MSSSSTQFAT  60
SRQMGIYEPF RQVSMWKDTF GGDNLSYTGA STIGEVDAKL ENKFELVSHE SVQPSGNDEE  120
GNKSSDKAQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL AQLEQELERS RKQGLYVGSP  180
LGTSHVGFSG TVNSGIMAFE MEYGHWVEEQ HKQNCELRNA LQAHAADIQL RMLVESALNH  240
YYSLFRMKAD AAKADVFYLV SGIWRTSAER FFLWIGGFRP SELLTVLLPQ IEPLTDQQVL  300
DVGNLQHSSQ QAEDALSQGI DKLQQSLAHT MAADPMSGDT YGSQMAAAVE KLDELESFVS  360
QADHLREQTL RRMSSILTTH QAARGLLALG EYFRRLRALS SLWAARPCEP V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887663.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887663.1	0.0	transcription factor TGA7 isoform X1
Swissprot	Q93ZE2	1e-156	TGA7_ARATH; Transcription factor TGA7
TrEMBL	F6H0P0	0.0	F6H0P0_VITVI; Uncharacterized protein
STRING	VIT_18s0001g04470.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-157	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]