PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887421.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 420aa    MW: 46522.6 Da    PI: 7.0805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20218267356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  XP_015887421.1 218 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYILRGE 267
                     8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.04E-32216276No hitNo description
SMARTSM003805.8E-36217280IPR001471AP2/ERF domain
PROSITE profilePS5103222.497217274IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23217275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-31217275IPR001471AP2/ERF domain
PRINTSPR003676.7E-11218229IPR001471AP2/ERF domain
PfamPF008475.5E-13218267IPR001471AP2/ERF domain
PRINTSPR003676.7E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGDQFPKMET FMPKDFPSYF PGIATGSNFL GDPNIWNAPT HHQNQGSKSL VSSSPDDQSS  60
VNPSGSTPCS SDVQQNAIPV NFLKMFPELS RAQVSELPLD SPPSSSSSKF PNLTLFLQEP  120
TILDHLSSSS PKNEPIPSSS FQIPQQLSQV PDMDWLRVHQ NLSNFPSKGF NDYWLSTTKT  180
QPMKYTGRKL HNHHQNKVNS PSFSSSSSSS SSSPGKLFRG VRQRHWGKWV AEIRLPRNRT  240
RVWLGTFDTA EEAAMAYDTA AYILRGEYAH LNFPDLKHQL KSNSLNGNTA ALLEAKLQAI  300
SQGINSSSSS SSTSSSSSRC QNSKKQYSVV DQSSSSPPTS IKKEQNLKMN NNGFLAQNSM  360
RNEWQFGLME NKVGENDENM NDNGKKSEDL VTADVEAVQL SRMPSLDMDI IWDALLVSDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20213274163ATERF1
3gcc_A2e-20213274163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1566520.0KJ156652.1 Ziziphus jujuba var. inermis isolate Ju2017 microsatellite Ju2017 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887421.20.0ethylene-responsive transcription factor ERF062
TrEMBLA0A2C9UDB91e-133A0A2C9UDB9_MANES; Uncharacterized protein
STRINGcassava4.1_023072m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-56ERF family protein