PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887273.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 119aa    MW: 14353.8 Da    PI: 4.2499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.45.7e-1067158128
             NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +++r+kk   g+  n    +g+Wk    d +v++ +g+ +g k+   f  g++++  +t+W m+eyrl
  XP_015887273.1   6 MFSYIQRRKKV-DGEDVNSEKVDGFWKIIQADIPVKE-DGRIIGYKNRVEFS-GNQRS--ETQWRMNEYRL 71 
                     45566666654.68888888889*************9.999**********8.55555..7********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.012194IPR003441NAC domain
PfamPF023651.5E-5671IPR003441NAC domain
SuperFamilySSF1019411.44E-15993IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDSNPMFSYI QRRKKVDGED VNSEKVDGFW KIIQADIPVK EDGRIIGYKN RVEFSGNQRS  60
ETQWRMNEYR LNQNDEESNI TEVDMWVVCR IYMYRSKGDE EAWDEDWYFS SDDEEIKLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2665112e-35KF266511.1 Ziziphus jujuba microsatellite SSR1011 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887273.13e-82NAC domain-containing protein 55-like
RefseqXP_024931717.13e-82NAC domain-containing protein 55-like
RefseqXP_024931718.13e-82NAC domain-containing protein 55-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.16e-12NAC domain containing protein 3