PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886978.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bZIP | ||||||||
Protein Properties | Length: 111aa MW: 12839.8 Da PI: 10.8479 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.1 | 2.5e-15 | 26 | 88 | 2 | 64 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 + ++errkq+NRe+A+rsR R+++e+ +L+ k++ L +e + L+ + + +ke+ klk+e++ XP_015886978.1 26 HDQRKERRKQSNRESAKRSRCRRQEECRKLQAKAEDLAKETSNLRAGIMRVSKECRKLKKENK 88 57799*******************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-13 | 22 | 85 | No hit | No description |
SMART | SM00338 | 1.0E-11 | 25 | 89 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.783 | 27 | 90 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.5E-13 | 27 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.5E-7 | 29 | 84 | No hit | No description |
CDD | cd14702 | 1.04E-10 | 30 | 81 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 32 | 47 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MVQTKSNTGI ASNWSSTKSI LAKEEHDQRK ERRKQSNRES AKRSRCRRQE ECRKLQAKAE 60 DLAKETSNLR AGIMRVSKEC RKLKKENKSI IVSHLNLTDM CFVVVGKYLN S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886978.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867010.1 | 2e-54 | G-box-binding factor 1-like | ||||
Refseq | XP_024924421.1 | 2e-54 | G-box-binding factor 1-like | ||||
Refseq | XP_024931448.1 | 4e-57 | G-box-binding factor 1-like | ||||
Swissprot | P42774 | 5e-18 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2N9I8H8 | 1e-18 | A0A2N9I8H8_FAGSY; Uncharacterized protein | ||||
STRING | scaffold_700433.1 | 1e-16 | (Arabidopsis lyrata) | ||||
STRING | XP_010432144.1 | 1e-16 | (Camelina sativa) | ||||
STRING | XP_010446753.1 | 1e-16 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15757 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 2e-20 | G-box binding factor 1 |