PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015886261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 481aa MW: 55374.3 Da PI: 6.8838 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 300.4 | 4.6e-92 | 84 | 478 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl A a+++++ ela + L++l +++s +gd++qR++ayf+ +Laa+l+ + s y+ + ++ts +ee+ a+ ++ vsP+++f+h XP_015886261.1 84 LIHLLLVTASAINENNVELALENLNELFQTVSLNGDSVQRVVAYFADGLAAKLLTKKSPFYEMIMKKPTS----EEEFLAFMDLYRVSPYYQFAH 174 689**********************************************************999998886....67777777899********** PP GRAS 96 ltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfef 178 +taNq+I ea+e+e +++HiiD+d+s+G+QWp+L+q+L++ + ++ slRiTg+g+ s eel+et++rL +f + + ++ fef XP_015886261.1 175 FTANQMIIEAFEKEeeeknnRALHIIDLDVSYGFQWPSLIQSLSEMAsrgggNNRISLRITGFGR----SLEELRETENRLVSFSKGFgNLGFEF 265 ************99888777789******************987544444544456*********....9****************99469**** PP GRAS 179 nvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 + l+ ++ + + ++++ r k++E++aVnlv++l +l s+++ ++e+Lk+v+sl+P +vv+ve+e ++n sFl rf+e+l+ ++a+fdsl+ XP_015886261.1 266 HGLLRSNNNLMMVDNIiRRKRNETVAVNLVFHLNTLD----SISK-ISETLKTVQSLNPCIVVMVEKEGSRNPRSFLSRFMESLHSFAAMFDSLD 355 ***888888888887637777**********999995....3333.568********************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrer........hetlekWrerleeaGFkpvplsekaakqaklllr........kvk...sdg 348 lp es+er +E+ lg+ei++++ e+++ e+ ++ +W++r+e+ GF+ ++ls+k + qaklll+ +++ g XP_015886261.1 356 DCLPLESSERLCIEKNHLGKEIKSMLNYEKDDDHEKisnclkydQRIETSWKARMESHGFEGIRLSSKCMIQAKLLLKirthycplQFEeenIGG 450 ******************************99766511111111334578**************************9733222222111111235 PP GRAS 349 yrveee.sgslv.lgWkdrpLvsvSaWr 374 ++v e+ +g ++ lgW+dr L+++SaWr XP_015886261.1 451 FKVVERdDGRAIsLGWQDRYLLTASAWR 478 7766544666667**************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.661 | 58 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-89 | 84 | 478 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 481 aa Download sequence Send to blast |
MEEIDEEKLL NLSLAIVTDS GGSVERKRKR IRREFGYSSS PNLFSNHEGF EGKIFRLLQQ 60 REQMLKLDHK RKGLVHEDGK GLHLIHLLLV TASAINENNV ELALENLNEL FQTVSLNGDS 120 VQRVVAYFAD GLAAKLLTKK SPFYEMIMKK PTSEEEFLAF MDLYRVSPYY QFAHFTANQM 180 IIEAFEKEEE EKNNRALHII DLDVSYGFQW PSLIQSLSEM ASRGGGNNRI SLRITGFGRS 240 LEELRETENR LVSFSKGFGN LGFEFHGLLR SNNNLMMVDN IIRRKRNETV AVNLVFHLNT 300 LDSISKISET LKTVQSLNPC IVVMVEKEGS RNPRSFLSRF MESLHSFAAM FDSLDDCLPL 360 ESSERLCIEK NHLGKEIKSM LNYEKDDDHE KISNCLKYDQ RIETSWKARM ESHGFEGIRL 420 SSKCMIQAKL LLKIRTHYCP LQFEEENIGG FKVVERDDGR AISLGWQDRY LLTASAWRCG 480 R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-58 | 92 | 477 | 27 | 378 | Protein SCARECROW |
5b3h_A | 2e-58 | 92 | 477 | 26 | 377 | Protein SCARECROW |
5b3h_D | 2e-58 | 92 | 477 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015886261.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886261.1 | 0.0 | protein SCARECROW-like | ||||
TrEMBL | M5VGL5 | 0.0 | M5VGL5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ00209 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6200 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 7e-54 | RGA-like 2 |