PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 364aa MW: 42066.4 Da PI: 9.5006 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 119 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L++H + H XP_015886183.1 119 YLCRVCGRKFYNNEKLVNHFKQlH 142 56*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 2.3E-9 | 37 | 120 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 5.97E-5 | 118 | 144 | No hit | No description |
PROSITE profile | PS50157 | 11.552 | 119 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 121 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 121 | 142 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 3.51E-15 | 136 | 271 | No hit | No description |
Pfam | PF01936 | 2.0E-8 | 191 | 266 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 2.3E-9 | 204 | 265 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MVVFLKLGNF FFTIQSRRLE KLSPFSVLNR FCHFAPKPQE NVAIFWDLDN KPPDPFPPYA 60 AAIKLKATAS SFGFVQHMIA YANRHSFSYV PPVVRERRKE RKLLNQLENK GVIKPVEPYL 120 CRVCGRKFYN NEKLVNHFKQ LHEREHMKRL NQIESARGSR RVKLVGKYSM KMEKYKNAAR 180 DVLTPKVGYG LADELKRAGF WVQTVSDKPQ AADVALKKHM VDMMDQRGAQ CFVLVSDDSD 240 FVDVLNEAKL RCLKTVVVGN VNDGTLKRIA DAGFSWKEIM MKKAKKEAVS VVGKWKDRDV 300 LKRLEWTYDP QIERNVYRSD DEDEDLLTEG SVEGVHDGCM QEDNSSSWWE IDSDSDIIMS 360 QRCK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 102 | ERRKERKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886183.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886166.1 | 0.0 | uncharacterized protein LOC107421439 | ||||
Refseq | XP_015886176.1 | 0.0 | uncharacterized protein LOC107421439 | ||||
Refseq | XP_015886183.1 | 0.0 | uncharacterized protein LOC107421439 | ||||
Refseq | XP_024930742.1 | 0.0 | uncharacterized protein LOC107421439 | ||||
TrEMBL | A0A061G4Y5 | 0.0 | A0A061G4Y5_THECC; Zinc finger family protein | ||||
STRING | EOY24473 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-122 | C2H2 family protein |