PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886100.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 613aa    MW: 68883.3 Da    PI: 4.4781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739.2e-54181442128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPtdeelv +yLkkk+ gk+l++ ++i+e+d+yk++P++Lp  +k+++++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++
  XP_015886100.1  18 PPGFRFHPTDEELVLYYLKKKICGKRLKI-DIIAETDVYKWDPEELPglSKLRSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRTITC 111
                     8****************************.99***************6449999***************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+kktLvfykgrap+ge+tdWvmhey+l
  XP_015886100.1 112 -NSRSVGVKKTLVFYKGRAPSGERTDWVMHEYTL 144
                     .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5914167IPR003441NAC domain
PROSITE profilePS5100555.53417167IPR003441NAC domain
PfamPF023655.9E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MVSSDASVGG FCDNQVWPPG FRFHPTDEEL VLYYLKKKIC GKRLKIDIIA ETDVYKWDPE  60
ELPGLSKLRS GDRQWFFFSP RDRKYPNGAR SNRATRHGYW KATGKDRTIT CNSRSVGVKK  120
TLVFYKGRAP SGERTDWVMH EYTLDEEEFK RCQNVKEYYA LYKAYKKSGP GPKNGEQYGA  180
PFREEDWADD ECPDFNSPIT LNDPVNKDRE FISNGDVRVE RQIPPSNDLE QFLKQIAEVP  240
LDLPHNNAYT YTPSQVMSEQ ETQSTLVDPS SRDIVLPEPV QSNVQQCNLQ ASFDVTESAV  300
SQLQSHEVSE VTSAPNIHEQ EQPLILPEED FLEMDDLLGP EPNFANSDQS LGNLRFDETD  360
RLSELDLFQD AGMFLNEMEP TDQATISQPY VNSLEQNMVT QFGYQLQANA AGASLVNNQM  420
YPEGLDPIYN QIYSDSGHIN NQLYPDGVDQ INNQFYPDGS AQIDNQLWAH DQGINNYTSA  480
EVNYGSLSNP SSGVVCDSSN YQAEANKNQT SNNGAATSQL SSALWAFVES IPTTPASAAE  540
NALVNRAFGR MSSFSRMRIN ARNTNDIAGN NAETVRKAVS KRGFILFPVL VAVFAILWVL  600
IGTMRLWGRS IPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-501814416140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886100.10.0NAC domain-containing protein 17-like
TrEMBLA0A2P5FR660.0A0A2P5FR66_TREOI; NAC domain containing protein
STRINGXP_008237396.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-146NAC domain containing protein 17