PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886036.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 343aa    MW: 37808.3 Da    PI: 4.9929
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.7e-16206242135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_015886036.1 206 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 242
                     *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.2E-766101IPR010399Tify domain
PROSITE profilePS5132012.94266101IPR010399Tify domain
PfamPF062003.4E-1069100IPR010399Tify domain
PfamPF062039.4E-15134175IPR010402CCT domain
PROSITE profilePS5101712.65134176IPR010402CCT domain
SMARTSM004012.7E-8200253IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.524200248IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-11202250No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14204247IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.62E-15205249No hitNo description
PfamPF003206.6E-14206242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFEEHLRG PIPIEDDDGE YEEGGGGGND GDDGMDEVEE NRINSANVIE  60
HGAMVMASRT SELTLSFEGE VYVFPAVTPE KVQAVLLLLG GRDIPTGVPT TIEVPYDQNR  120
VVGDTPKRSN LSRRIASLVR FREKRKERCF DKKIRYTVRK EVAQRMHRKN GQFASLKESS  180
GTSSWDSAKS CLQNGTPRPE TVLRKCQHCG VSENNTPAMR RGPAGPRTLC NACGLMWANK  240
GTLRDLSKGG RNLSMDHIEP ETPLDVKPSI AEGELSGNQD GHVLFLCYMS RHFLNKDLHE  300
AAEDLTNTMP IGLVHSSTND EEEPLVELAN PSDTDIDIPA NFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886036.10.0GATA transcription factor 24-like isoform X2
SwissprotQ8GXL76e-73GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A251RHF60.0A0A251RHF6_PRUPE; Uncharacterized protein
STRINGXP_008219237.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]