PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 689aa MW: 72078 Da PI: 6.0204 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.1e-08 | 203 | 247 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw XP_015885960.1 203 RKPWSEAEDMELISAVQKCGEGNWANILKGDFkGDRTAAQLSQRW 247 789************************984222488888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.814 | 198 | 255 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 199 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.81E-12 | 199 | 252 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-8 | 202 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-7 | 203 | 247 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.23E-13 | 204 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MIEKAKKHKK GSISEEDIAT VLRRYTATTV LSLLQEVAHC TDVKIDWNAL VERTSTGITN 60 PREYQMLWRH LAYRGAFLDK IEDEAQPLDD DSDLEYELEA FPAVSSEAST EATACVKVLL 120 ASGLPSDSSL PNGPTVEAPL TINIPNFQSS RALESLQPPC SMQGMNITVP VSVQKQPAPS 180 GTVAEGSDAS GPASSSMFPR RRRKPWSEAE DMELISAVQK CGEGNWANIL KGDFKGDRTA 240 AQLSQRWAII RKRHGNLNTG GSSTGTQLSE AQLAARHAVS LALNMPVKNL TANAIGSGTN 300 ATSNFAGINA TSNLARANAT SNSAGANVTN NSVGTNATGN SAGMNAASNS LRPTFSSESS 360 VAGSSSSFAQ AQKQSQQSVV AAKPSPAGSL GCAAKSRIIT KKPSVKSVSN SDATVRAMAV 420 AAGARIASPS DAASLYKAAQ AKNAVHIMPT GGAPIKSSVP GGVANNPEAH PNGRYICPGM 480 SATPVSPYPA ASSSASHSGS VKAVSSTTQH TVSTDPASLN VLSKQTNEES CTLVGEPSIE 540 EVKSTEERTV TVPGDSTKDK IQGDGVCVSV NVQDELVQED KVGSPKQEAK LKVNDAEADV 600 ENPVSSLNVK TAESNHEAVI DIKPKDRPSE NGVKISGSPV IGDDNHSTAK ENCENQNKNE 660 MKEDIPVRVS DGCSEKLETL GKYEAGNEI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 204 | PRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885960.1 | 0.0 | uncharacterized protein LOC107421267 | ||||
TrEMBL | A0A2P5F1D7 | 0.0 | A0A2P5F1D7_TREOI; GAMYB transcription factor | ||||
STRING | XP_010086659.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 3e-77 | MYB_related family protein |