PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015885834.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 670aa MW: 77958.8 Da PI: 6.8042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015885834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.3	3e-24	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a+++v++ ++++w++ ++eleHnH+++ XP_015885834.1 59 DFYNVYAKQQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVVRLVDSKRWRIVEVELEHNHQVS 143 6*******************999*************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-22	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-24	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.421	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-4	561	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDEYDV EGDCSVVDHD DEAGEPRTRK EPPLPTVGLE FDSFDEAYDF 60 YNVYAKQQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV 120 VRLVDSKRWR IVEVELEHNH QVSPQIKRFY KSHKKMILAA KKAQPSPEPV TEVHTIKLYR 180 TAIMDAGSNG YSHFNEREGM NPVDHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD 240 DDGRLRNVFW ADARSRAAYG YFCETVAIDT ACLANKYEVP LISFVGVNHH GQSILLGCGF 300 LGNESVDYFV WILRAWLKCM LDCPPQVIIT DQCKPLQIAI SEAIPSARHC YCLWYIMQRI 360 PEKLGGLKGY EAIKRQLHKA VYNSLKIAEF ETSWAEMIKW NGLGDNKWLQ TLYEERQLWV 420 PVYLKDTFFA GMVPIQENDG VTAFFDGYVH KHTSFKEFVD KYDLALHRKH MKEVTSDMES 480 ANSSYELKTR CNFEVQLSKV YTKEIFKRFQ SEVEGMYSCF NTRQVNVNGP IITYIVKERV 540 EVGENEKEVR NYEVLFETTQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPSRYILPR 600 WSKDFKCRYL LDHSSCNIDM FNPVHRYNYL NKRALPVVEQ GAHSQDCYKT ALHELEELLN 660 KFKLVDDNLM

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDEYDV EGDCSVVDHD DEAGEPRTRK EPPLPTVGLE FDSFDEAYDF  60
YNVYAKQQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV  120
VRLVDSKRWR IVEVELEHNH QVSPQIKRFY KSHKKMILAA KKAQPSPEPV TEVHTIKLYR  180
TAIMDAGSNG YSHFNEREGM NPVDHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD  240
DDGRLRNVFW ADARSRAAYG YFCETVAIDT ACLANKYEVP LISFVGVNHH GQSILLGCGF  300
LGNESVDYFV WILRAWLKCM LDCPPQVIIT DQCKPLQIAI SEAIPSARHC YCLWYIMQRI  360
PEKLGGLKGY EAIKRQLHKA VYNSLKIAEF ETSWAEMIKW NGLGDNKWLQ TLYEERQLWV  420
PVYLKDTFFA GMVPIQENDG VTAFFDGYVH KHTSFKEFVD KYDLALHRKH MKEVTSDMES  480
ANSSYELKTR CNFEVQLSKV YTKEIFKRFQ SEVEGMYSCF NTRQVNVNGP IITYIVKERV  540
EVGENEKEVR NYEVLFETTQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPSRYILPR  600
WSKDFKCRYL LDHSSCNIDM FNPVHRYNYL NKRALPVVEQ GAHSQDCYKT ALHELEELLN  660
KFKLVDDNLM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015885834.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885834.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2N9FSW5	0.0	A0A2N9FSW5_FAGSY; Uncharacterized protein
STRING	XP_008219518.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]