PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARF | ||||||||
Protein Properties | Length: 614aa MW: 67214.5 Da PI: 5.112 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.7e-24 | 141 | 242 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ ++ XP_015885598.1 141 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDVHGVVWDFRHIYRGTPRRHLLTTGWSKFVNYKKLVAGDSVVFM--RNL 231 89*********************999****985444444..9************************************************..567 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++e++v+v+r+ XP_015885598.1 232 RREMFVGVRRA 242 88899***996 PP | |||||||
2 | Auxin_resp | 95 | 1.2e-31 | 294 | 377 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Pr+++s+Fvvk+e ve+alkv +s+GmR+kma+etedss+ ++ +Gtv+ s d+ W++S+Wr+L+ XP_015885598.1 294 AAELAAQGLPFEVVYYPRVGWSDFVVKAELVEEALKVFWSAGMRVKMAMETEDSSRMTWfQGTVSTASPPDNGPWRGSPWRMLQ 377 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-35 | 134 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-29 | 136 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.74E-20 | 140 | 241 | No hit | No description |
SMART | SM01019 | 2.3E-20 | 141 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 141 | 242 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.885 | 141 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-29 | 294 | 377 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MPPTPPNLRR IDPKIWRACA GSSVQIPAVD SRVYYFPQGH LEQSSSSLPP LLSPLVLSKP 60 LILCRIAAVQ FLADPHTDEV FAKLVLHPIN PQLSALFRSS GHGRLQTQDG EGGGGAGGDE 120 DDDDEEEGEE QGQEEDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPPL NYQAEPPVQT 180 LSVTDVHGVV WDFRHIYRGT PRRHLLTTGW SKFVNYKKLV AGDSVVFMRN LRREMFVGVR 240 RAVRSSSSNG DCSRWSSQFG GTMRVKAEEE SCNRDGGMSR SGRGRLSVEA VAEAAELAAQ 300 GLPFEVVYYP RVGWSDFVVK AELVEEALKV FWSAGMRVKM AMETEDSSRM TWFQGTVSTA 360 SPPDNGPWRG SPWRMLQVTW DEPEVLQNAK RVSPWQVEFV ASTPPLQTCG FPPAKRFRAP 420 LNSGLLTDGE GEVFFPMTGA ANSTIEQLNA SLLSYNTFPA GMQGARQELF SVSSLSNLLS 480 ETTRMSAYNS FGNNVVPKLK TVSTELNIGS SQSDNLSPDS QSSIRSFGTE FVGNQYCNPT 540 KVGKNTFQLF GQIINVPLPA ENGFDDVGCT EGNGIKGYND TDGVNDSPKL SYTKLLERID 600 VQCSRAPAIE ACYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 8e-69 | 14 | 398 | 22 | 353 | Auxin response factor 1 |
4ldy_B | 8e-69 | 14 | 398 | 22 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885598.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885595.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_015885596.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_015885597.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_015885598.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_024930458.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A2L1GH29 | 0.0 | A0A2L1GH29_9ROSA; Auxin response factor | ||||
STRING | XP_008233939.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-166 | auxin response factor 17 |