PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885596.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 614aa    MW: 67214.5 Da    PI: 5.112
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24141242199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++ 
  XP_015885596.1 141 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDVHGVVWDFRHIYRGTPRRHLLTTGWSKFVNYKKLVAGDSVVFM--RNL 231
                     89*********************999****985444444..9************************************************..567 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++e++v+v+r+
  XP_015885596.1 232 RREMFVGVRRA 242
                     88899***996 PP
2Auxin_resp951.2e-31294377183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++ +FevvY+Pr+++s+Fvvk+e ve+alkv +s+GmR+kma+etedss+ ++ +Gtv+  s  d+  W++S+Wr+L+
  XP_015885596.1 294 AAELAAQGLPFEVVYYPRVGWSDFVVKAELVEEALKVFWSAGMRVKMAMETEDSSRMTWfQGTVSTASPPDNGPWRGSPWRMLQ 377
                     68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-35134252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29136249IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-20140241No hitNo description
SMARTSM010192.3E-20141243IPR003340B3 DNA binding domain
PfamPF023621.1E-21141242IPR003340B3 DNA binding domain
PROSITE profilePS5086311.885141243IPR003340B3 DNA binding domain
PfamPF065078.4E-29294377IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MPPTPPNLRR IDPKIWRACA GSSVQIPAVD SRVYYFPQGH LEQSSSSLPP LLSPLVLSKP  60
LILCRIAAVQ FLADPHTDEV FAKLVLHPIN PQLSALFRSS GHGRLQTQDG EGGGGAGGDE  120
DDDDEEEGEE QGQEEDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPPL NYQAEPPVQT  180
LSVTDVHGVV WDFRHIYRGT PRRHLLTTGW SKFVNYKKLV AGDSVVFMRN LRREMFVGVR  240
RAVRSSSSNG DCSRWSSQFG GTMRVKAEEE SCNRDGGMSR SGRGRLSVEA VAEAAELAAQ  300
GLPFEVVYYP RVGWSDFVVK AELVEEALKV FWSAGMRVKM AMETEDSSRM TWFQGTVSTA  360
SPPDNGPWRG SPWRMLQVTW DEPEVLQNAK RVSPWQVEFV ASTPPLQTCG FPPAKRFRAP  420
LNSGLLTDGE GEVFFPMTGA ANSTIEQLNA SLLSYNTFPA GMQGARQELF SVSSLSNLLS  480
ETTRMSAYNS FGNNVVPKLK TVSTELNIGS SQSDNLSPDS QSSIRSFGTE FVGNQYCNPT  540
KVGKNTFQLF GQIINVPLPA ENGFDDVGCT EGNGIKGYND TDGVNDSPKL SYTKLLERID  600
VQCSRAPAIE ACYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-691439822353Auxin response factor 1
4ldy_B8e-691439822353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885595.10.0auxin response factor 17
RefseqXP_015885596.10.0auxin response factor 17
RefseqXP_015885597.10.0auxin response factor 17
RefseqXP_015885598.10.0auxin response factor 17
RefseqXP_024930458.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2L1GH290.0A0A2L1GH29_9ROSA; Auxin response factor
STRINGXP_008233939.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-166auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]