PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885190.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 346aa    MW: 38207 Da    PI: 9.271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.34.3e-55121401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePw+Lp +k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  XP_015885190.1  12 LPPGFRFHPTDEELITFYLLNKIADATFTG-RAIADVDLNKCEPWELPgTKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFN 105
                     79*************************999.89***************7799999***************************************9 PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  XP_015885190.1 106 SvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 140
                     989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-639162IPR003441NAC domain
PROSITE profilePS5100560.73712162IPR003441NAC domain
PfamPF023651.5E-2813140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGSDANKEE KLPPGFRFHP TDEELITFYL LNKIADATFT GRAIADVDLN KCEPWELPGT  60
KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSVTSE LVGMKKTLVF  120
YRGRAPRGEK TNWVMHEYRI HSKAAFRTSK QDEWVVCRVF QKSAAKKYPT SQSRTVVNPY  180
NLEIGSSVVA SQLMHLGDPS QFPYGRNYMT NPQELAELSR VFRGGSTSGS NLSIPSQLNY  240
PVGGGYFTMS GLNLNLGGGT PSAQTAFRPV VPQPLTAPPA APSAMNHQDV TSSLSMMTSG  300
GGGAQLAVET GYGNGTDMNN VATGHAGNRY MNVEHCMDLD NYWPAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-5441679171NO APICAL MERISTEM PROTEIN
1ut4_B5e-5441679171NO APICAL MERISTEM PROTEIN
1ut7_A5e-5441679171NO APICAL MERISTEM PROTEIN
1ut7_B5e-5441679171NO APICAL MERISTEM PROTEIN
3swm_A5e-54416712174NAC domain-containing protein 19
3swm_B5e-54416712174NAC domain-containing protein 19
3swm_C5e-54416712174NAC domain-containing protein 19
3swm_D5e-54416712174NAC domain-containing protein 19
3swp_A5e-54416712174NAC domain-containing protein 19
3swp_B5e-54416712174NAC domain-containing protein 19
3swp_C5e-54416712174NAC domain-containing protein 19
3swp_D5e-54416712174NAC domain-containing protein 19
4dul_A5e-5441679171NAC domain-containing protein 19
4dul_B5e-5441679171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885186.10.0NAC domain-containing protein 79 isoform X1
RefseqXP_024930593.10.0NAC domain-containing protein 79 isoform X2
TrEMBLA0A2C9W4N01e-166A0A2C9W4N0_MANES; Uncharacterized protein
TrEMBLA0A2C9W4Q21e-167A0A2C9W4Q2_MANES; Uncharacterized protein
STRINGcassava4.1_011442m1e-165(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-116NAC domain containing protein 38