PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885188.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 363aa    MW: 40103 Da    PI: 8.8984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.3e-55311581128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++
  XP_015885188.1  31 LPPGFRFHPTDEELITFYLLNKIADATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 124
                     79*************************999.89***************99999****************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  XP_015885188.1 125 vTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 158
                     89999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6426179IPR003441NAC domain
PROSITE profilePS5100560.50331179IPR003441NAC domain
PfamPF023651.6E-2832158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEKQPSEQEG NEGSHKKADM AGSDANKEEK LPPGFRFHPT DEELITFYLL NKIADATFTG  60
RAIADVDLNK CEPWELPAKA KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE  120
IFNSVTSELV GMKKTLVFYR GRAPRGEKTN WVMHEYRIHS KAAFRTSKDE WVVCRVFQKS  180
AAKKYPTSQS RTVVNPYNLE IGSSVVASQL MHLGDPSQFP YGRNYMTNPQ ELAELSRVFR  240
GGSTSGSNLS IPSQLNYPVG GGYFTMSGLN LNLGGGTPSA QTAFRPVVPQ PLTAPPAAPS  300
AMNHQDVTSS LSMMTSGGGG AQLAVETGYG NGTDMNNVAT GHAGNRYMNV EHCMDLDNYW  360
PAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-56131841171NO APICAL MERISTEM PROTEIN
1ut4_B7e-56131841171NO APICAL MERISTEM PROTEIN
1ut7_A7e-56131841171NO APICAL MERISTEM PROTEIN
1ut7_B7e-56131841171NO APICAL MERISTEM PROTEIN
4dul_A7e-56131841171NAC domain-containing protein 19
4dul_B7e-56131841171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885188.10.0NAC domain-containing protein 79 isoform X3
TrEMBLA0A2C9W5R61e-167A0A2C9W5R6_MANES; Uncharacterized protein
STRINGcassava4.1_011442m1e-168(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-116NAC domain containing protein 38