PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015885186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40231.1 Da PI: 8.8984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.1 | 2.3e-55 | 31 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_015885186.1 31 LPPGFRFHPTDEELITFYLLNKIADATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 124 79*************************999.89***************99999****************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyr+ XP_015885186.1 125 vTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 158 89999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-64 | 26 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.737 | 31 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-28 | 32 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MEKQPSEQEG NEGSHKKADM AGSDANKEEK LPPGFRFHPT DEELITFYLL NKIADATFTG 60 RAIADVDLNK CEPWELPAKA KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE 120 IFNSVTSELV GMKKTLVFYR GRAPRGEKTN WVMHEYRIHS KAAFRTSKQD EWVVCRVFQK 180 SAAKKYPTSQ SRTVVNPYNL EIGSSVVASQ LMHLGDPSQF PYGRNYMTNP QELAELSRVF 240 RGGSTSGSNL SIPSQLNYPV GGGYFTMSGL NLNLGGGTPS AQTAFRPVVP QPLTAPPAAP 300 SAMNHQDVTS SLSMMTSGGG GAQLAVETGY GNGTDMNNVA TGHAGNRYMN VEHCMDLDNY 360 WPAY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-56 | 13 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-56 | 13 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-56 | 13 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-56 | 13 | 185 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-56 | 13 | 185 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-56 | 13 | 185 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015885186.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885186.1 | 0.0 | NAC domain-containing protein 79 isoform X1 | ||||
Refseq | XP_024930593.1 | 0.0 | NAC domain-containing protein 79 isoform X2 | ||||
TrEMBL | A0A2C9W4N0 | 1e-168 | A0A2C9W4N0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011442m | 1e-166 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-118 | NAC domain containing protein 38 |