PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885185.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 365aa    MW: 40318.2 Da    PI: 8.8984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.8e-55311591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePw+Lp +k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  XP_015885185.1  31 LPPGFRFHPTDEELITFYLLNKIADATFTG-RAIADVDLNKCEPWELPgTKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFN 124
                     79*************************999.89***************7799999***************************************9 PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  XP_015885185.1 125 SvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 159
                     989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6326181IPR003441NAC domain
PROSITE profilePS5100560.73731181IPR003441NAC domain
PfamPF023651.7E-2832159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEKQPSEQEG NEGSHKKADM AGSDANKEEK LPPGFRFHPT DEELITFYLL NKIADATFTG  60
RAIADVDLNK CEPWELPGTK AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK  120
EIFNSVTSEL VGMKKTLVFY RGRAPRGEKT NWVMHEYRIH SKAAFRTSKQ DEWVVCRVFQ  180
KSAAKKYPTS QSRTVVNPYN LEIGSSVVAS QLMHLGDPSQ FPYGRNYMTN PQELAELSRV  240
FRGGSTSGSN LSIPSQLNYP VGGGYFTMSG LNLNLGGGTP SAQTAFRPVV PQPLTAPPAA  300
PSAMNHQDVT SSLSMMTSGG GGAQLAVETG YGNGTDMNNV ATGHAGNRYM NVEHCMDLDN  360
YWPAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-54131861171NO APICAL MERISTEM PROTEIN
1ut4_B3e-54131861171NO APICAL MERISTEM PROTEIN
1ut7_A3e-54131861171NO APICAL MERISTEM PROTEIN
1ut7_B3e-54131861171NO APICAL MERISTEM PROTEIN
4dul_A3e-54131861171NAC domain-containing protein 19
4dul_B3e-54131861171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885186.10.0NAC domain-containing protein 79 isoform X1
RefseqXP_024930593.10.0NAC domain-containing protein 79 isoform X2
TrEMBLA0A2C9W4N01e-167A0A2C9W4N0_MANES; Uncharacterized protein
STRINGcassava4.1_011442m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-116NAC domain containing protein 38