PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885133.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 433aa    MW: 46916.1 Da    PI: 6.1192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10274322355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_015885133.1 274 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 322
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.58E-11269326No hitNo description
SuperFamilySSF474596.8E-17269338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16272339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSGHENEDVG FQHRSESILN CPSSGMSTTH LPEKVSGMTM SSLSIFKPSN GADPFFASAW  60
DPIVSLSQSE NFGDSSMVSH GELSNPPYPV VLENQGMNST SHLVQYPSDS SFVEMVPKLP  120
CFGSGSFSEM VGSFGLAECS GIANTGCPPK YTLHKEKATE RASPIGAQSH DGRETEDGGI  180
GSSSSGKRRK RALDSSSPFS PNKNAEGEQH KDLSGESSDV MKDHEEKKHK AEENTSGNIR  240
NKQTGKQSKD SSHSEEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG  300
CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN IDIERILSKD ILNSRGGNGA  360
IFGFGPGINS SQPYQHGIFQ GTLPTVPSTS PQYTSLPQTV LDNELQGLFH MGFDSSSAID  420
NLGANAGLLK PEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024930783.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A251RBF70.0A0A251RBF7_PRUPE; Uncharacterized protein
STRINGXP_008220406.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-81bHLH family protein