PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884916.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 364aa    MW: 40211.6 Da    PI: 6.62
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884916.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17252286135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_015884916.1 252 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 286
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.2E-8017342IPR016679Transcription factor, GATA, plant
SMARTSM004014.4E-17246296IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.36246282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14248283IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.0E-15248310No hitNo description
CDDcd002026.95E-14251298No hitNo description
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15252286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEAPEFYQNS FCPQFVPEKR HSTDNKTAGG ADHFIVEDLL DFSNNDAVIT DGAFDSVTGN  60
STDSSTVTVV DSCNSSSFSG CEPNFVGDIG CRSFTDGNFS GDLCVPYDDL AELEWLSNFV  120
EESFSSDDLQ RLQLISGMKA SRTTDEEASD TRHFQPEPNR NAPIFNSEMS VPAKARSKRS  180
RAAPCNWTSR LLLLSPTTTT TTASTTSSSE ADVVVSTPPP PPPNPGKKTV KAPQKKKESP  240
DSAAGSGDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL  300
TKHSNSHRKV LELRRQKEMM RAQQQQQQQF LHHHHHHQNM VFDVSNGDDY LIHQHVGPDF  360
RQMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884916.10.0GATA transcription factor 12
SwissprotP697812e-98GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2C9UBF90.0A0A2C9UBF9_MANES; GATA transcription factor
STRINGcassava4.1_010069m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-84GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]