PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015884813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 950aa MW: 104136 Da PI: 4.9843 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.8 | 5.5e-25 | 150 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F +++ XP_015884813.1 150 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 240 99*********************999*****954444.4.38************************************************..457 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+v+v+r+ XP_015884813.1 241 KSQLMVGVRRA 251 7778*****97 PP | |||||||
2 | Auxin_resp | 112.5 | 4.1e-37 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv+++++ +ka++ +++svGmRf m+fete+s +rr++Gt++g+sdldp+rWp+SkWr+L+ XP_015884813.1 276 AAHAAANRSPFTIFYNPRACPSEFVIPLARHRKAVYgTQLSVGMRFGMMFETEESGKRRYMGTIIGISDLDPLRWPGSKWRNLQ 359 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.76E-47 | 137 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-41 | 143 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.09E-23 | 149 | 250 | No hit | No description |
Pfam | PF02362 | 1.8E-22 | 150 | 251 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 150 | 252 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-25 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.7E-32 | 276 | 359 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.3E-10 | 832 | 920 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.965 | 833 | 917 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.45E-9 | 835 | 912 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 950 aa Download sequence Send to blast |
MMGSGVEENI KTGGLVTAGP PTNLLEDMKL LKEMQDQSGS RKAINSELWH ACAGPLVCLP 60 QVGSLVYYFP QGHSEQVAVS TKRTATSQIP NYPNLPSQLL CQVQNVTLHA DKDTDEIYAQ 120 MSLQPVNSEK DVFPVPDFGL KPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPQLD 180 YTMQPPTQEL VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS LFVGAKRLRA GDSVLFIRDE 240 KSQLMVGVRR ANRQQTTLPS SVLSADSMHI GVLAAAAHAA ANRSPFTIFY NPRACPSEFV 300 IPLARHRKAV YGTQLSVGMR FGMMFETEES GKRRYMGTII GISDLDPLRW PGSKWRNLQV 360 EWDEPGCCDK QNRVSSWEIE TPESLFIFPS LTSSLKRPLH PGYLESEWGN LIKRPFIRVP 420 ENGNGDLPYS ISNLCSEQLI KMLLKPQLVN YPGTLSSLHQ ESAAKVDPLQ DVKNMQTATQ 480 KHPVLLSEST LLQSQIHPSS SVDQSGAPNS SSNTAIPGNI NSISKVENPT PVGNNAAKTK 540 IETEISTEQL CQLTSAGQSS MEKLASGLLN PQNLVNQLTF LNQNQSPVQL QNSSWTMHPE 600 TLLYHSQVQN EINQSDFPST NGSLPSLDAD ECNMFYSSCQ PFAGTLRSPG PLSVFGMQDP 660 TFVFPEANNY SLPSMGQDLW DNNLRFLPQV EQLTSFPQQD PCNLNCVSSY SGNLKDLSDE 720 SNNQSGTYSS HNVDVGGGSC VVDPSVSSTI LDELSPLKNA DFQNPSDCLV GNFSSSQDVQ 780 SQITSTSLGG DSQALSRQDL PDNSGGTSSS NVDVDESSLL QNSSWQQVVP PVRTYTKVQK 840 AGSVGRSIDV TSFKNYDELC SAIECMFGLE GLLNDPRGSG WKLVYVDYEN DVLLVGDDPW 900 EEFVGCVRCI RILSPSEVQQ MSEEGMKLLN SAAAMQGINA CVSEGAGGRA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 4 | 384 | 6 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015884813.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884813.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | W9R8R1 | 0.0 | W9R8R1_9ROSA; Auxin response factor | ||||
STRING | XP_010095167.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |