PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884641.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 539aa MW: 56848.6 Da PI: 8.623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_015884641.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	15.6	4.5e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_015884641.1 142 WKCERCSKKYAVQSDWKAHMKTC 164 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.08E-7	65	88	No hit	No description
SMART	SM00355	0.017	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	66	88	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.0022	66	88	No hit	No description
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.7E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.08E-7	137	163	No hit	No description
SMART	SM00355	77	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MGEQENSSPM TVSTASAEAS ISSSGYQTTP VEVAPPKKKR NLPGMPDPDA EVVALSPKTL 60 LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIRKRVYVCP EPSCVHHNPA 120 RALGDLTGIK KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAEESAKA QTLAGNSEAK AVVASPPPPP HTPCFFLVVY EITKASIYLF 240 CNLFTELPEN PIGLSPLTQG ATCLTTITTS ISNSSSSNCN NNNNSSSSVF ASIFAPSTAA 300 PVSQPPQTST SSFSNLISAL ARSDCSTSHP SISVIEPTSL SLSTSLYLSN NGSSLFPTPD 360 QDHHRQYTPS AQPAAMSATA LLQKAAQIGA AASNTSLLRG FGLATSSSSP GQDNSTATQW 420 NMNFQSKPEN NNSSVAAGLG LGLPSAGNST LTDLMMGPAA AFGSQPMTRD LLGLSIGVGG 480 ASTGGLSALL NSFSGGNGFD NITAAAAAAT SYGGGGGGGS QRETWEGPSE RKPSGPSLH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MGEQENSSPM TVSTASAEAS ISSSGYQTTP VEVAPPKKKR NLPGMPDPDA EVVALSPKTL  60
LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIRKRVYVCP EPSCVHHNPA  120
RALGDLTGIK KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESAKA QTLAGNSEAK AVVASPPPPP HTPCFFLVVY EITKASIYLF  240
CNLFTELPEN PIGLSPLTQG ATCLTTITTS ISNSSSSNCN NNNNSSSSVF ASIFAPSTAA  300
PVSQPPQTST SSFSNLISAL ARSDCSTSHP SISVIEPTSL SLSTSLYLSN NGSSLFPTPD  360
QDHHRQYTPS AQPAAMSATA LLQKAAQIGA AASNTSLLRG FGLATSSSSP GQDNSTATQW  420
NMNFQSKPEN NNSSVAAGLG LGLPSAGNST LTDLMMGPAA AFGSQPMTRD LLGLSIGVGG  480
ASTGGLSALL NSFSGGNGFD NITAAAAAAT SYGGGGGGGS QRETWEGPSE RKPSGPSLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-37	138	207	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-37	138	207	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884641.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884641.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-139	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	M5XL67	0.0	M5XL67_PRUPE; Uncharacterized protein
STRING	EMJ26827	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-114	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]