PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884625.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ZF-HD
Protein Properties Length: 341aa    MW: 37799.1 Da    PI: 6.8565
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.91.1e-3295151360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++rY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e + e
  XP_015884625.1  95 TIRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEIDGE 151
                     689*************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2495149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.3E-3096148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3097148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.97998147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.93E-19246309IPR009057Homeodomain-like
PROSITE profilePS500718.681246310IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-29247310IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-26248304IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEYRAQDNEM RTPGGSLNYI HLTTKESSGG ERRRVGIHNG SSTTPGLTCT QTLDYPHHVV  60
QPPPPLHVRD PEPDRVTTGA GAGGPKLKSP PSAGTIRYRE CLKNHAANIG GNVFDGCGEF  120
MPSGEEGTLE ALKCAACDCH RNFHRKEIDG ESQYSPGSRR SLMLTPLQLP PPMPSPSSAG  180
LGHHHHHHHQ HQKFSIGYHG NHPMASIVQP MNVAYGSAGG TESSSEDLNM FHSTAEAPVA  240
PQPFALSKKR FRTKFTQEQK DRMLEFAEKM DWRIQKQNEE EVEKFCAEVG VKRQVLKVWM  300
HNNKSTIKKQ QQQESSNQSL EMIEADQPEA EAEAEPEGVD N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232473061675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884625.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884625.10.0zinc-finger homeodomain protein 5
SwissprotQ9FRL52e-65ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLW9S6C31e-114W9S6C3_9ROSA; Uncharacterized protein
STRINGXP_010102085.11e-115(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-65homeobox protein 33