PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884575.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 377aa MW: 41907 Da PI: 7.1022

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_015884575.1 73 RERWTEEEHKKFIEALKMYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 117 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.79E-17	67	122	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.922	68	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-10	69	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-16	71	120	IPR006447	Myb domain, plants
SMART	SM00717	7.4E-14	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-15	73	116	IPR001005	SANT/Myb domain
CDD	cd00167	3.67E-11	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MFTENTNLNF FSVYLVFVFW VQDQSEGISS HIALPSGDGI SLALASVQPK DQFSCGNEYP 60 PKVRKQYTIT KQRERWTEEE HKKFIEALKM YGRAWRKIEE HVGTKTAVQI RSHAQKFFSK 120 VSRDQDANNM CSVEPIEIPP PRPKRKPVHP YPRKLVHPLS KEISMAEYST KSSSPNLSNL 180 EMENQSPNLS NLELEYQSPK SVLSAMGSDT LGSSNSNTPN GSLSPVSSGA GNLLSSKEIR 240 TSFASPTVVL EETGSTQETS AKEASTTSTT TQSLKLFGRT VLVTDSQRPS SPIVETCKSQ 300 PSNVHEEQHV KELPSSNIAV LESLAGNLQY TWSQFPQHSH MALYLKEKEI QQQVDECIQV 360 TNAAGSHEKA RVDSVCV

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MFTENTNLNF FSVYLVFVFW VQDQSEGISS HIALPSGDGI SLALASVQPK DQFSCGNEYP  60
PKVRKQYTIT KQRERWTEEE HKKFIEALKM YGRAWRKIEE HVGTKTAVQI RSHAQKFFSK  120
VSRDQDANNM CSVEPIEIPP PRPKRKPVHP YPRKLVHPLS KEISMAEYST KSSSPNLSNL  180
EMENQSPNLS NLELEYQSPK SVLSAMGSDT LGSSNSNTPN GSLSPVSSGA GNLLSSKEIR  240
TSFASPTVVL EETGSTQETS AKEASTTSTT TQSLKLFGRT VLVTDSQRPS SPIVETCKSQ  300
PSNVHEEQHV KELPSSNIAV LESLAGNLQY TWSQFPQHSH MALYLKEKEI QQQVDECIQV  360
TNAAGSHEKA RVDSVCV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884575.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884575.1	0.0	protein REVEILLE 1-like
TrEMBL	M5X4Q8	7e-98	M5X4Q8_PRUPE; Uncharacterized protein
STRING	EMJ16503	1e-98	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-52	MYB_related family protein