PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884441.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 316aa    MW: 34914.9 Da    PI: 8.8997
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19176209134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  XP_015884441.1 176 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 209
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-13169210No hitNo description
SMARTSM004014.3E-19170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.059170206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.36E-14175207No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003208.2E-17176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTPVYLNPPP PSSFSLAEEK EDQHLKLLFN SVPYQTPSNS LSTPTFFNSL QDHQDQSGTT  60
VEESQERDHK ADKPIWKEAA GSSSYYYKVC SSSSTSVQPV VASDFMSNRQ SEDQDEDDSK  120
SKNGSVKWMS SKMRLMQKMM NPPDHIPAAT VDKRERNNST TQFNFSFNAN NTVRVCSDCN  180
TTTTPLWRSG PRGPKSLCNA CGIRQRKARR AMSEAAAAAN GFLIATDTSS SSMSTKNIKV  240
HNKEKKSRAG HVAQYKNKCK LVDSSVTSTS STTTSISSQR KLCRFNDFGF GHGVFPQDVA  300
EAAILLMELS CGFIHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884441.10.0GATA transcription factor 21-like
TrEMBLW9RRY82e-64W9RRY8_9ROSA; Putative GATA transcription factor 22
STRINGXP_010097066.13e-65(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-21cytokinin-responsive gata factor 1